Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.78■■□□□ 1.08
PTPN9P43378 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.78■■□□□ 1.08
PTPN9P43378 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PTPN9P43378 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PTPN9P43378 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PTPN9P43378 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
PTPN9P43378 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
PTPN9P43378 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PTPN9P43378 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PTPN9P43378 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
PTPN9P43378 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.77■■□□□ 1.08
PTPN9P43378 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PTPN9P43378 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PTPN9P43378 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PTPN9P43378 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.77■■□□□ 1.08
PTPN9P43378 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.77■■□□□ 1.08
PTPN9P43378 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.77■■□□□ 1.08
PTPN9P43378 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
PTPN9P43378 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
PTPN9P43378 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
PTPN9P43378 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN9P43378 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN9P43378 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.76■■□□□ 1.07
PTPN9P43378 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN9P43378 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN9P43378 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.76■■□□□ 1.07
PTPN9P43378 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.76■■□□□ 1.07
PTPN9P43378 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.76■■□□□ 1.07
PTPN9P43378 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.76■■□□□ 1.07
PTPN9P43378 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN9P43378 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN9P43378 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN9P43378 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PTPN9P43378 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.76■■□□□ 1.07
PTPN9P43378 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTPN9P43378 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.75■■□□□ 1.07
PTPN9P43378 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTPN9P43378 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTPN9P43378 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
PTPN9P43378 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTPN9P43378 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.75■■□□□ 1.07
PTPN9P43378 RARRES2P11-201ENST00000635158 484 ntBASIC21.75■■□□□ 1.07
PTPN9P43378 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PTPN9P43378 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PTPN9P43378 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
PTPN9P43378 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PTPN9P43378 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.74■■□□□ 1.07
PTPN9P43378 AL162430.1-201ENST00000480705 870 ntBASIC21.74■■□□□ 1.07
PTPN9P43378 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.74■■□□□ 1.07
PTPN9P43378 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.74■■□□□ 1.07
PTPN9P43378 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PTPN9P43378 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PTPN9P43378 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.74■■□□□ 1.07
PTPN9P43378 UBE2DNL-204ENST00000602536 740 ntBASIC21.74■■□□□ 1.07
PTPN9P43378 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PTPN9P43378 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
PTPN9P43378 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.74■■□□□ 1.07
PTPN9P43378 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.73■■□□□ 1.07
PTPN9P43378 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.73■■□□□ 1.07
PTPN9P43378 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
PTPN9P43378 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.73■■□□□ 1.07
PTPN9P43378 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC21.73■■□□□ 1.07
PTPN9P43378 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PTPN9P43378 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.73■■□□□ 1.07
PTPN9P43378 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.73■■□□□ 1.07
PTPN9P43378 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PTPN9P43378 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PTPN9P43378 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PTPN9P43378 AC245052.3-201ENST00000450182 901 ntBASIC21.73■■□□□ 1.07
PTPN9P43378 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.73■■□□□ 1.07
PTPN9P43378 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.73■■□□□ 1.07
PTPN9P43378 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.73■■□□□ 1.07
PTPN9P43378 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.73■■□□□ 1.07
PTPN9P43378 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.73■■□□□ 1.07
PTPN9P43378 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PTPN9P43378 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PTPN9P43378 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PTPN9P43378 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PTPN9P43378 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC21.73■■□□□ 1.07
PTPN9P43378 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PTPN9P43378 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PTPN9P43378 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
PTPN9P43378 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PTPN9P43378 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.72■■□□□ 1.07
PTPN9P43378 MIR935-201ENST00000401179 91 ntBASIC21.72■■□□□ 1.07
PTPN9P43378 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PTPN9P43378 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.72■■□□□ 1.07
PTPN9P43378 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
PTPN9P43378 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.72■■□□□ 1.07
PTPN9P43378 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PTPN9P43378 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
PTPN9P43378 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PTPN9P43378 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.71■■□□□ 1.07
PTPN9P43378 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PTPN9P43378 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
PTPN9P43378 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.71■■□□□ 1.07
PTPN9P43378 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
PTPN9P43378 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
PTPN9P43378 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.71■■□□□ 1.07
PTPN9P43378 AC243732.1-201ENST00000612648 864 ntBASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms