Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
POLR2J3Q9H1A7 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
POLR2J3Q9H1A7 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
POLR2J3Q9H1A7 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
POLR2J3Q9H1A7 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
POLR2J3Q9H1A7 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
POLR2J3Q9H1A7 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.34■□□□□ 0.69
POLR2J3Q9H1A7 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
POLR2J3Q9H1A7 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.34■□□□□ 0.69
POLR2J3Q9H1A7 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
POLR2J3Q9H1A7 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
POLR2J3Q9H1A7 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
POLR2J3Q9H1A7 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
POLR2J3Q9H1A7 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
POLR2J3Q9H1A7 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
POLR2J3Q9H1A7 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
POLR2J3Q9H1A7 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.33■□□□□ 0.69
POLR2J3Q9H1A7 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
POLR2J3Q9H1A7 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
POLR2J3Q9H1A7 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
POLR2J3Q9H1A7 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
POLR2J3Q9H1A7 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
POLR2J3Q9H1A7 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.33■□□□□ 0.68
POLR2J3Q9H1A7 AC024257.2-201ENST00000549699 147 ntBASIC19.33■□□□□ 0.68
POLR2J3Q9H1A7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.33■□□□□ 0.68
POLR2J3Q9H1A7 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
POLR2J3Q9H1A7 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
POLR2J3Q9H1A7 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
POLR2J3Q9H1A7 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
POLR2J3Q9H1A7 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
POLR2J3Q9H1A7 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
POLR2J3Q9H1A7 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 FEM1AP1-201ENST00000431297 1995 ntBASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
POLR2J3Q9H1A7 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 AC027682.1-201ENST00000562846 899 ntBASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
POLR2J3Q9H1A7 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
POLR2J3Q9H1A7 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
POLR2J3Q9H1A7 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
POLR2J3Q9H1A7 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
POLR2J3Q9H1A7 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
POLR2J3Q9H1A7 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms