Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF4P78317 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF4P78317 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RNF4P78317 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
RNF4P78317 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF4P78317 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF4P78317 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF4P78317 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.43■□□□□ 0.7
RNF4P78317 CDCA4P2-201ENST00000441182 718 ntBASIC19.43■□□□□ 0.7
RNF4P78317 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.43■□□□□ 0.7
RNF4P78317 DUX4L16-201ENST00000555130 1264 ntBASIC19.43■□□□□ 0.7
RNF4P78317 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.43■□□□□ 0.7
RNF4P78317 AC010536.3-201ENST00000620306 533 ntBASIC19.43■□□□□ 0.7
RNF4P78317 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF4P78317 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF4P78317 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RNF4P78317 AC244015.2-201ENST00000616358 1861 ntBASIC19.43■□□□□ 0.7
RNF4P78317 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.42■□□□□ 0.7
RNF4P78317 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF4P78317 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF4P78317 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF4P78317 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.42■□□□□ 0.7
RNF4P78317 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
RNF4P78317 AC090192.1-201ENST00000517740 490 ntBASIC19.42■□□□□ 0.7
RNF4P78317 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.42■□□□□ 0.7
RNF4P78317 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.42■□□□□ 0.7
RNF4P78317 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
RNF4P78317 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.42■□□□□ 0.7
RNF4P78317 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF4P78317 AC079834.2-201ENST00000609776 1949 ntBASIC19.42■□□□□ 0.7
RNF4P78317 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.42■□□□□ 0.7
RNF4P78317 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
RNF4P78317 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RNF4P78317 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RNF4P78317 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
RNF4P78317 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.42■□□□□ 0.7
RNF4P78317 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF4P78317 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
RNF4P78317 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.41■□□□□ 0.7
RNF4P78317 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.41■□□□□ 0.7
RNF4P78317 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF4P78317 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
RNF4P78317 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF4P78317 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.41■□□□□ 0.7
RNF4P78317 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.41■□□□□ 0.7
RNF4P78317 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.41■□□□□ 0.7
RNF4P78317 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF4P78317 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.41■□□□□ 0.7
RNF4P78317 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF4P78317 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF4P78317 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF4P78317 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.41■□□□□ 0.7
RNF4P78317 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF4P78317 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF4P78317 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RNF4P78317 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RNF4P78317 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
RNF4P78317 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF4P78317 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF4P78317 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF4P78317 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF4P78317 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
RNF4P78317 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.4■□□□□ 0.7
RNF4P78317 AC026185.1-201ENST00000445748 174 ntBASIC19.4■□□□□ 0.7
RNF4P78317 TERF1P5-201ENST00000477545 1207 ntBASIC19.4■□□□□ 0.7
RNF4P78317 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.4■□□□□ 0.7
RNF4P78317 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.4■□□□□ 0.7
RNF4P78317 RAP2CP1-201ENST00000605103 478 ntBASIC19.4■□□□□ 0.7
RNF4P78317 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.4■□□□□ 0.7
RNF4P78317 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
RNF4P78317 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF4P78317 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF4P78317 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF4P78317 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF4P78317 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF4P78317 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
RNF4P78317 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.39■□□□□ 0.7
RNF4P78317 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RNF4P78317 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
RNF4P78317 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF4P78317 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF4P78317 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.39■□□□□ 0.69
RNF4P78317 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.39■□□□□ 0.69
RNF4P78317 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF4P78317 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF4P78317 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF4P78317 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RNF4P78317 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.39■□□□□ 0.69
RNF4P78317 AC231657.2-201ENST00000624556 255 ntBASIC19.39■□□□□ 0.69
RNF4P78317 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF4P78317 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF4P78317 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF4P78317 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF4P78317 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RNF4P78317 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF4P78317 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF4P78317 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
RNF4P78317 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF4P78317 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF4P78317 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms