Protein–RNA interactions for Protein: Q9ES00

Ube4b, Ubiquitin conjugation factor E4 B, mousemouse

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4bQ9ES00 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Ube4bQ9ES00 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
Ube4bQ9ES00 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
Ube4bQ9ES00 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Ube4bQ9ES00 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Ube4bQ9ES00 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Ube4bQ9ES00 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Ube4bQ9ES00 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
Ube4bQ9ES00 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Ube4bQ9ES00 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Ube4bQ9ES00 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
Ube4bQ9ES00 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Ube4bQ9ES00 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Ube4bQ9ES00 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Ube4bQ9ES00 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Ube4bQ9ES00 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
Ube4bQ9ES00 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Ube4bQ9ES00 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
Ube4bQ9ES00 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.33
Ube4bQ9ES00 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ube4bQ9ES00 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ube4bQ9ES00 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ube4bQ9ES00 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ube4bQ9ES00 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ube4bQ9ES00 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ube4bQ9ES00 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
Ube4bQ9ES00 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Ube4bQ9ES00 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Ube4bQ9ES00 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Ube4bQ9ES00 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC23.36■■□□□ 1.33
Ube4bQ9ES00 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ube4bQ9ES00 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC23.34■■□□□ 1.33
Ube4bQ9ES00 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Ube4bQ9ES00 AL845457.1-201ENSMUST00000197244 68 ntBASIC23.33■■□□□ 1.33
Ube4bQ9ES00 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC23.33■■□□□ 1.33
Ube4bQ9ES00 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.32
Ube4bQ9ES00 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ube4bQ9ES00 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ube4bQ9ES00 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ube4bQ9ES00 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ube4bQ9ES00 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC23.3■■□□□ 1.32
Ube4bQ9ES00 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Ube4bQ9ES00 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
Ube4bQ9ES00 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ube4bQ9ES00 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Ube4bQ9ES00 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Ube4bQ9ES00 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ube4bQ9ES00 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Ube4bQ9ES00 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ube4bQ9ES00 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Ube4bQ9ES00 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Ube4bQ9ES00 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ube4bQ9ES00 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ube4bQ9ES00 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
Ube4bQ9ES00 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
Ube4bQ9ES00 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC23.23■■□□□ 1.31
Ube4bQ9ES00 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
Ube4bQ9ES00 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
Ube4bQ9ES00 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ube4bQ9ES00 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
Ube4bQ9ES00 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Ube4bQ9ES00 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Ube4bQ9ES00 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Ube4bQ9ES00 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Ube4bQ9ES00 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Ube4bQ9ES00 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ube4bQ9ES00 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Ube4bQ9ES00 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ube4bQ9ES00 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ube4bQ9ES00 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Ube4bQ9ES00 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
Ube4bQ9ES00 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Ube4bQ9ES00 Mipep-204ENSMUST00000225043 1548 ntBASIC23.15■■□□□ 1.3
Ube4bQ9ES00 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Ube4bQ9ES00 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Ube4bQ9ES00 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC23.14■■□□□ 1.29
Ube4bQ9ES00 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Ube4bQ9ES00 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
Ube4bQ9ES00 Gm17082-201ENSMUST00000166043 1091 ntBASIC23.13■■□□□ 1.29
Ube4bQ9ES00 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC23.13■■□□□ 1.29
Ube4bQ9ES00 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Ube4bQ9ES00 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC23.12■■□□□ 1.29
Ube4bQ9ES00 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Ube4bQ9ES00 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Ube4bQ9ES00 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Ube4bQ9ES00 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
Ube4bQ9ES00 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
Ube4bQ9ES00 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ube4bQ9ES00 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ube4bQ9ES00 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ube4bQ9ES00 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Ube4bQ9ES00 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ube4bQ9ES00 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ube4bQ9ES00 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ube4bQ9ES00 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ube4bQ9ES00 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
Ube4bQ9ES00 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
Ube4bQ9ES00 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
Ube4bQ9ES00 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Ube4bQ9ES00 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms