Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
LRFN1Q9P244 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LRFN1Q9P244 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
LRFN1Q9P244 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.3■□□□□ 0.68
LRFN1Q9P244 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LRFN1Q9P244 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LRFN1Q9P244 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LRFN1Q9P244 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LRFN1Q9P244 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LRFN1Q9P244 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.3■□□□□ 0.68
LRFN1Q9P244 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.3■□□□□ 0.68
LRFN1Q9P244 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LRFN1Q9P244 AC007322.4-201ENST00000509611 723 ntBASIC19.3■□□□□ 0.68
LRFN1Q9P244 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.3■□□□□ 0.68
LRFN1Q9P244 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.3■□□□□ 0.68
LRFN1Q9P244 AC105036.2-201ENST00000569468 176 ntBASIC19.3■□□□□ 0.68
LRFN1Q9P244 AC133552.2-202ENST00000575694 574 ntBASIC19.3■□□□□ 0.68
LRFN1Q9P244 AC068338.2-201ENST00000563278 1430 ntBASIC19.3■□□□□ 0.68
LRFN1Q9P244 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LRFN1Q9P244 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LRFN1Q9P244 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.3■□□□□ 0.68
LRFN1Q9P244 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.3■□□□□ 0.68
LRFN1Q9P244 FAM99A-202ENST00000538190 1989 ntBASIC19.3■□□□□ 0.68
LRFN1Q9P244 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LRFN1Q9P244 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LRFN1Q9P244 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.29■□□□□ 0.68
LRFN1Q9P244 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LRFN1Q9P244 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LRFN1Q9P244 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.29■□□□□ 0.68
LRFN1Q9P244 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
LRFN1Q9P244 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.29■□□□□ 0.68
LRFN1Q9P244 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.29■□□□□ 0.68
LRFN1Q9P244 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LRFN1Q9P244 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
LRFN1Q9P244 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.29■□□□□ 0.68
LRFN1Q9P244 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
LRFN1Q9P244 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LRFN1Q9P244 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
LRFN1Q9P244 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LRFN1Q9P244 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LRFN1Q9P244 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.28■□□□□ 0.68
LRFN1Q9P244 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
LRFN1Q9P244 AC010542.4-201ENST00000563151 1910 ntBASIC19.28■□□□□ 0.68
LRFN1Q9P244 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LRFN1Q9P244 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LRFN1Q9P244 GUSBP6-202ENST00000438529 1198 ntBASIC19.28■□□□□ 0.68
LRFN1Q9P244 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LRFN1Q9P244 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
LRFN1Q9P244 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.28■□□□□ 0.68
LRFN1Q9P244 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LRFN1Q9P244 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.28■□□□□ 0.68
LRFN1Q9P244 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.28■□□□□ 0.68
LRFN1Q9P244 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LRFN1Q9P244 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.28■□□□□ 0.68
LRFN1Q9P244 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LRFN1Q9P244 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LRFN1Q9P244 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LRFN1Q9P244 AC012676.1-201ENST00000574705 1949 ntBASIC19.27■□□□□ 0.68
LRFN1Q9P244 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LRFN1Q9P244 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LRFN1Q9P244 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LRFN1Q9P244 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.27■□□□□ 0.68
LRFN1Q9P244 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
LRFN1Q9P244 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.27■□□□□ 0.68
LRFN1Q9P244 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LRFN1Q9P244 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LRFN1Q9P244 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LRFN1Q9P244 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.27■□□□□ 0.68
LRFN1Q9P244 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LRFN1Q9P244 CYP2T1P-201ENST00000432607 1285 ntBASIC19.27■□□□□ 0.68
LRFN1Q9P244 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.27■□□□□ 0.68
LRFN1Q9P244 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
LRFN1Q9P244 AC142086.2-201ENST00000569753 217 ntBASIC19.27■□□□□ 0.68
LRFN1Q9P244 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.27■□□□□ 0.68
LRFN1Q9P244 AC008694.1-202ENST00000636953 945 ntBASIC19.27■□□□□ 0.68
LRFN1Q9P244 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.27■□□□□ 0.68
LRFN1Q9P244 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LRFN1Q9P244 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LRFN1Q9P244 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
LRFN1Q9P244 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LRFN1Q9P244 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LRFN1Q9P244 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.26■□□□□ 0.67
LRFN1Q9P244 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LRFN1Q9P244 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.26■□□□□ 0.67
LRFN1Q9P244 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LRFN1Q9P244 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
LRFN1Q9P244 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.26■□□□□ 0.67
LRFN1Q9P244 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.26■□□□□ 0.67
LRFN1Q9P244 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.26■□□□□ 0.67
LRFN1Q9P244 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.26■□□□□ 0.67
LRFN1Q9P244 PKD1P6-201ENST00000343738 4769 ntBASIC19.26■□□□□ 0.67
LRFN1Q9P244 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LRFN1Q9P244 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.26■□□□□ 0.67
LRFN1Q9P244 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LRFN1Q9P244 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN1Q9P244 RBM17P2-201ENST00000616397 1405 ntBASIC19.25■□□□□ 0.67
LRFN1Q9P244 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LRFN1Q9P244 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.25■□□□□ 0.67
LRFN1Q9P244 AC242852.2-201ENST00000615738 1807 ntBASIC19.25■□□□□ 0.67
LRFN1Q9P244 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms