Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC104187.1-201ENST00000607510 612 ntBASIC24.18■■□□□ 1.46
SH3RF1Q7Z6J0 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC24.18■■□□□ 1.46
SH3RF1Q7Z6J0 ME2-206ENST00000638410 2289 ntTSL 5 BASIC24.18■■□□□ 1.46
SH3RF1Q7Z6J0 ME2-210ENST00000639255 2262 ntTSL 5 BASIC24.18■■□□□ 1.46
SH3RF1Q7Z6J0 AC244015.2-201ENST00000616358 1861 ntBASIC24.17■■□□□ 1.46
SH3RF1Q7Z6J0 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
SH3RF1Q7Z6J0 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC24.17■■□□□ 1.46
SH3RF1Q7Z6J0 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
SH3RF1Q7Z6J0 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC24.17■■□□□ 1.46
SH3RF1Q7Z6J0 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC24.17■■□□□ 1.46
SH3RF1Q7Z6J0 AC010141.3-201ENST00000456659 717 ntBASIC24.17■■□□□ 1.46
SH3RF1Q7Z6J0 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC24.17■■□□□ 1.46
SH3RF1Q7Z6J0 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC24.17■■□□□ 1.46
SH3RF1Q7Z6J0 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC24.17■■□□□ 1.46
SH3RF1Q7Z6J0 OR7E47P-201ENST00000546390 1422 ntBASIC24.17■■□□□ 1.46
SH3RF1Q7Z6J0 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 RGMA-211ENST00000557420 989 ntTSL 3 BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 PFKL-212ENST00000628044 129 ntTSL 3 BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 AL137060.1-201ENST00000618151 2648 ntBASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
SH3RF1Q7Z6J0 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SH3RF1Q7Z6J0 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SH3RF1Q7Z6J0 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
SH3RF1Q7Z6J0 SLC29A4P1-201ENST00000398760 971 ntBASIC24.15■■□□□ 1.46
SH3RF1Q7Z6J0 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
SH3RF1Q7Z6J0 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC24.15■■□□□ 1.46
SH3RF1Q7Z6J0 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
SH3RF1Q7Z6J0 AC098934.4-201ENST00000564127 592 ntBASIC24.15■■□□□ 1.46
SH3RF1Q7Z6J0 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC24.15■■□□□ 1.46
SH3RF1Q7Z6J0 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC24.15■■□□□ 1.46
SH3RF1Q7Z6J0 TBCB-214ENST00000629269 413 ntTSL 5 BASIC24.15■■□□□ 1.46
SH3RF1Q7Z6J0 EFS-203ENST00000429593 2610 ntTSL 2 BASIC24.15■■□□□ 1.46
SH3RF1Q7Z6J0 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SH3RF1Q7Z6J0 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SH3RF1Q7Z6J0 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.46
SH3RF1Q7Z6J0 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
SH3RF1Q7Z6J0 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
SH3RF1Q7Z6J0 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
SH3RF1Q7Z6J0 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC24.14■■□□□ 1.46
SH3RF1Q7Z6J0 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
SH3RF1Q7Z6J0 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
SH3RF1Q7Z6J0 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
SH3RF1Q7Z6J0 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
SH3RF1Q7Z6J0 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC24.14■■□□□ 1.45
SH3RF1Q7Z6J0 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC24.14■■□□□ 1.45
SH3RF1Q7Z6J0 UBE2DNL-204ENST00000602536 740 ntBASIC24.14■■□□□ 1.45
SH3RF1Q7Z6J0 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC24.14■■□□□ 1.45
SH3RF1Q7Z6J0 OXCT2P1-201ENST00000447263 1535 ntBASIC24.14■■□□□ 1.45
SH3RF1Q7Z6J0 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC24.14■■□□□ 1.45
SH3RF1Q7Z6J0 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
SH3RF1Q7Z6J0 ASL-203ENST00000380839 1765 ntTSL 5 BASIC24.14■■□□□ 1.45
SH3RF1Q7Z6J0 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.45
SH3RF1Q7Z6J0 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
SH3RF1Q7Z6J0 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
SH3RF1Q7Z6J0 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SH3RF1Q7Z6J0 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
SH3RF1Q7Z6J0 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SH3RF1Q7Z6J0 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SH3RF1Q7Z6J0 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC24.13■■□□□ 1.45
SH3RF1Q7Z6J0 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SH3RF1Q7Z6J0 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC24.13■■□□□ 1.45
SH3RF1Q7Z6J0 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC24.13■■□□□ 1.45
SH3RF1Q7Z6J0 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
SH3RF1Q7Z6J0 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC24.13■■□□□ 1.45
SH3RF1Q7Z6J0 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 PARP1-202ENST00000366792 553 ntTSL 3 BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 AC087239.1-201ENST00000622671 572 ntBASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC24.12■■□□□ 1.45
SH3RF1Q7Z6J0 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC24.11■■□□□ 1.45
SH3RF1Q7Z6J0 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC24.11■■□□□ 1.45
SH3RF1Q7Z6J0 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC24.11■■□□□ 1.45
SH3RF1Q7Z6J0 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
SH3RF1Q7Z6J0 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
SH3RF1Q7Z6J0 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC24.11■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms