Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM38O00635 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM38O00635 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.1■□□□□ 0.97
TRIM38O00635 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.1■□□□□ 0.97
TRIM38O00635 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.1■□□□□ 0.97
TRIM38O00635 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.1■□□□□ 0.97
TRIM38O00635 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.1■□□□□ 0.97
TRIM38O00635 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM38O00635 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.1■□□□□ 0.97
TRIM38O00635 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM38O00635 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.1■□□□□ 0.97
TRIM38O00635 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.1■□□□□ 0.97
TRIM38O00635 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.1■□□□□ 0.97
TRIM38O00635 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.09■□□□□ 0.97
TRIM38O00635 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM38O00635 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM38O00635 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
TRIM38O00635 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
TRIM38O00635 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.09■□□□□ 0.97
TRIM38O00635 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM38O00635 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
TRIM38O00635 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.09■□□□□ 0.97
TRIM38O00635 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM38O00635 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.08■□□□□ 0.97
TRIM38O00635 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.08■□□□□ 0.97
TRIM38O00635 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.97
TRIM38O00635 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM38O00635 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM38O00635 GPX1P1-201ENST00000388829 606 ntBASIC21.08■□□□□ 0.97
TRIM38O00635 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.08■□□□□ 0.97
TRIM38O00635 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.08■□□□□ 0.97
TRIM38O00635 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.08■□□□□ 0.97
TRIM38O00635 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
TRIM38O00635 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM38O00635 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM38O00635 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM38O00635 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
TRIM38O00635 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM38O00635 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM38O00635 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM38O00635 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TRIM38O00635 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM38O00635 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM38O00635 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
TRIM38O00635 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.07■□□□□ 0.96
TRIM38O00635 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM38O00635 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.07■□□□□ 0.96
TRIM38O00635 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
TRIM38O00635 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.07■□□□□ 0.96
TRIM38O00635 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
TRIM38O00635 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM38O00635 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM38O00635 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM38O00635 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM38O00635 FAM99A-202ENST00000538190 1989 ntBASIC21.06■□□□□ 0.96
TRIM38O00635 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM38O00635 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM38O00635 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.06■□□□□ 0.96
TRIM38O00635 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM38O00635 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM38O00635 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
TRIM38O00635 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
TRIM38O00635 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM38O00635 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM38O00635 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM38O00635 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.06■□□□□ 0.96
TRIM38O00635 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM38O00635 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.06■□□□□ 0.96
TRIM38O00635 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM38O00635 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM38O00635 AL050303.2-201ENST00000619798 666 ntBASIC21.06■□□□□ 0.96
TRIM38O00635 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM38O00635 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
TRIM38O00635 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM38O00635 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM38O00635 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM38O00635 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
TRIM38O00635 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM38O00635 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM38O00635 ABHD17AP1-201ENST00000358206 933 ntBASIC21.05■□□□□ 0.96
TRIM38O00635 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM38O00635 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM38O00635 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM38O00635 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.05■□□□□ 0.96
TRIM38O00635 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM38O00635 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM38O00635 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM38O00635 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM38O00635 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
TRIM38O00635 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.04■□□□□ 0.96
TRIM38O00635 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM38O00635 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
TRIM38O00635 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
TRIM38O00635 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM38O00635 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.04■□□□□ 0.96
TRIM38O00635 AC010542.4-201ENST00000563151 1910 ntBASIC21.04■□□□□ 0.96
TRIM38O00635 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM38O00635 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
TRIM38O00635 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
TRIM38O00635 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms