Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4BQ9Y4P1 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4BQ9Y4P1 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.96■□□□□ 0.79
ATG4BQ9Y4P1 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.96■□□□□ 0.79
ATG4BQ9Y4P1 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4BQ9Y4P1 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.96■□□□□ 0.79
ATG4BQ9Y4P1 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.96■□□□□ 0.79
ATG4BQ9Y4P1 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4BQ9Y4P1 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
ATG4BQ9Y4P1 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
ATG4BQ9Y4P1 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.96■□□□□ 0.79
ATG4BQ9Y4P1 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.95■□□□□ 0.79
ATG4BQ9Y4P1 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4BQ9Y4P1 AL137060.1-201ENST00000618151 2648 ntBASIC19.95■□□□□ 0.78
ATG4BQ9Y4P1 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4BQ9Y4P1 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4BQ9Y4P1 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4BQ9Y4P1 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
ATG4BQ9Y4P1 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4BQ9Y4P1 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.95■□□□□ 0.78
ATG4BQ9Y4P1 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4BQ9Y4P1 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4BQ9Y4P1 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4BQ9Y4P1 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
ATG4BQ9Y4P1 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
ATG4BQ9Y4P1 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 DUX4L2-201ENST00000561772 1275 ntBASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 DUX4L6-201ENST00000626483 1275 ntBASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 DUX4L1-201ENST00000627662 1275 ntBASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 DUX4L8-201ENST00000629013 1275 ntBASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 DUX4L3-201ENST00000630187 1275 ntBASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 DUX4L7-201ENST00000630678 1275 ntBASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 DUX4L5-201ENST00000630834 1275 ntBASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
ATG4BQ9Y4P1 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 STX5-203ENST00000394690 1568 ntTSL 5 BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 FEM1AP4-201ENST00000443167 1987 ntBASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
ATG4BQ9Y4P1 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 AF106564.1-201ENST00000607058 2553 ntBASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
ATG4BQ9Y4P1 AL024507.2-201ENST00000606070 2574 ntBASIC19.91■□□□□ 0.78
ATG4BQ9Y4P1 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ATG4BQ9Y4P1 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
ATG4BQ9Y4P1 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.91■□□□□ 0.78
ATG4BQ9Y4P1 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
ATG4BQ9Y4P1 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.91■□□□□ 0.78
ATG4BQ9Y4P1 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.91■□□□□ 0.78
ATG4BQ9Y4P1 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ATG4BQ9Y4P1 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.91■□□□□ 0.78
ATG4BQ9Y4P1 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
ATG4BQ9Y4P1 AC004854.2-201ENST00000608450 1441 ntBASIC19.91■□□□□ 0.78
ATG4BQ9Y4P1 AP004607.4-201ENST00000530158 1459 ntBASIC19.91■□□□□ 0.78
ATG4BQ9Y4P1 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms