Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
USHBP1Q8N6Y0 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC27.98■■■□□ 2.07
USHBP1Q8N6Y0 DUSP5P2-201ENST00000426873 1033 ntBASIC27.98■■■□□ 2.07
USHBP1Q8N6Y0 OR2A1-AS1-201ENST00000462305 773 ntBASIC27.98■■■□□ 2.07
USHBP1Q8N6Y0 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC27.98■■■□□ 2.07
USHBP1Q8N6Y0 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC27.98■■■□□ 2.07
USHBP1Q8N6Y0 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC27.98■■■□□ 2.07
USHBP1Q8N6Y0 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
USHBP1Q8N6Y0 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC27.98■■■□□ 2.07
USHBP1Q8N6Y0 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC27.98■■■□□ 2.07
USHBP1Q8N6Y0 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC27.98■■■□□ 2.07
USHBP1Q8N6Y0 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC27.98■■■□□ 2.07
USHBP1Q8N6Y0 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 RPS2P52-201ENST00000469610 820 ntBASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 AC091874.3-201ENST00000512672 1195 ntBASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC27.97■■■□□ 2.07
USHBP1Q8N6Y0 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC27.96■■■□□ 2.07
USHBP1Q8N6Y0 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC27.96■■■□□ 2.07
USHBP1Q8N6Y0 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
USHBP1Q8N6Y0 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC27.96■■■□□ 2.07
USHBP1Q8N6Y0 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
USHBP1Q8N6Y0 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
USHBP1Q8N6Y0 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC27.96■■■□□ 2.07
USHBP1Q8N6Y0 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
USHBP1Q8N6Y0 AC098590.1-201ENST00000468126 897 ntBASIC27.96■■■□□ 2.07
USHBP1Q8N6Y0 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC27.96■■■□□ 2.07
USHBP1Q8N6Y0 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC27.96■■■□□ 2.07
USHBP1Q8N6Y0 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
USHBP1Q8N6Y0 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC27.96■■■□□ 2.07
USHBP1Q8N6Y0 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC27.96■■■□□ 2.07
USHBP1Q8N6Y0 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
USHBP1Q8N6Y0 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
USHBP1Q8N6Y0 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC27.95■■■□□ 2.07
USHBP1Q8N6Y0 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
USHBP1Q8N6Y0 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC27.95■■■□□ 2.06
USHBP1Q8N6Y0 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC27.95■■■□□ 2.06
USHBP1Q8N6Y0 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC27.95■■■□□ 2.06
USHBP1Q8N6Y0 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC27.95■■■□□ 2.06
USHBP1Q8N6Y0 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC27.95■■■□□ 2.06
USHBP1Q8N6Y0 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC27.95■■■□□ 2.06
USHBP1Q8N6Y0 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC27.94■■■□□ 2.06
USHBP1Q8N6Y0 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC27.94■■■□□ 2.06
USHBP1Q8N6Y0 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC27.94■■■□□ 2.06
USHBP1Q8N6Y0 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC27.94■■■□□ 2.06
USHBP1Q8N6Y0 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
USHBP1Q8N6Y0 AC097658.1-201ENST00000475555 843 ntBASIC27.94■■■□□ 2.06
USHBP1Q8N6Y0 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC27.94■■■□□ 2.06
USHBP1Q8N6Y0 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC27.94■■■□□ 2.06
USHBP1Q8N6Y0 AC243732.1-201ENST00000612648 864 ntBASIC27.94■■■□□ 2.06
USHBP1Q8N6Y0 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC27.94■■■□□ 2.06
USHBP1Q8N6Y0 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
USHBP1Q8N6Y0 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC27.94■■■□□ 2.06
USHBP1Q8N6Y0 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
USHBP1Q8N6Y0 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
USHBP1Q8N6Y0 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
USHBP1Q8N6Y0 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC27.93■■■□□ 2.06
USHBP1Q8N6Y0 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
USHBP1Q8N6Y0 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
USHBP1Q8N6Y0 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC27.93■■■□□ 2.06
USHBP1Q8N6Y0 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC27.93■■■□□ 2.06
USHBP1Q8N6Y0 AL355472.2-201ENST00000422958 438 ntBASIC27.93■■■□□ 2.06
USHBP1Q8N6Y0 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
USHBP1Q8N6Y0 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
USHBP1Q8N6Y0 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
USHBP1Q8N6Y0 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC27.93■■■□□ 2.06
USHBP1Q8N6Y0 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC27.92■■■□□ 2.06
USHBP1Q8N6Y0 AC092053.2-201ENST00000640557 1818 ntBASIC27.92■■■□□ 2.06
USHBP1Q8N6Y0 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
USHBP1Q8N6Y0 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC27.92■■■□□ 2.06
USHBP1Q8N6Y0 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
USHBP1Q8N6Y0 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
USHBP1Q8N6Y0 ESRRAP1-201ENST00000400596 1257 ntBASIC27.92■■■□□ 2.06
USHBP1Q8N6Y0 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC27.92■■■□□ 2.06
USHBP1Q8N6Y0 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC27.92■■■□□ 2.06
USHBP1Q8N6Y0 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
USHBP1Q8N6Y0 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC27.92■■■□□ 2.06
USHBP1Q8N6Y0 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
USHBP1Q8N6Y0 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC27.92■■■□□ 2.06
USHBP1Q8N6Y0 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC27.91■■■□□ 2.06
USHBP1Q8N6Y0 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC27.91■■■□□ 2.06
USHBP1Q8N6Y0 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC27.91■■■□□ 2.06
USHBP1Q8N6Y0 AC010542.4-201ENST00000563151 1910 ntBASIC27.91■■■□□ 2.06
USHBP1Q8N6Y0 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC27.91■■■□□ 2.06
USHBP1Q8N6Y0 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC27.91■■■□□ 2.06
USHBP1Q8N6Y0 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC27.91■■■□□ 2.06
USHBP1Q8N6Y0 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC27.91■■■□□ 2.06
USHBP1Q8N6Y0 AL162412.1-201ENST00000567129 965 ntBASIC27.91■■■□□ 2.06
USHBP1Q8N6Y0 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC27.91■■■□□ 2.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms