Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AL355472.2-201ENST00000422958 438 ntBASIC21.18■□□□□ 0.98
CXCL12P48061 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.18■□□□□ 0.98
CXCL12P48061 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
CXCL12P48061 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.18■□□□□ 0.98
CXCL12P48061 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.18■□□□□ 0.98
CXCL12P48061 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.18■□□□□ 0.98
CXCL12P48061 HLA-B-256ENST00000639848 1089 ntBASIC21.18■□□□□ 0.98
CXCL12P48061 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CXCL12P48061 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC21.18■□□□□ 0.98
CXCL12P48061 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
CXCL12P48061 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CXCL12P48061 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CXCL12P48061 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CXCL12P48061 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CXCL12P48061 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CXCL12P48061 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.17■□□□□ 0.98
CXCL12P48061 RPPH1-201ENST00000516869 333 ntBASIC21.17■□□□□ 0.98
CXCL12P48061 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.17■□□□□ 0.98
CXCL12P48061 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC21.17■□□□□ 0.98
CXCL12P48061 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.17■□□□□ 0.98
CXCL12P48061 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.17■□□□□ 0.98
CXCL12P48061 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CXCL12P48061 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.17■□□□□ 0.98
CXCL12P48061 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CXCL12P48061 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CXCL12P48061 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CXCL12P48061 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CXCL12P48061 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CXCL12P48061 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CXCL12P48061 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CXCL12P48061 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.16■□□□□ 0.98
CXCL12P48061 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.16■□□□□ 0.98
CXCL12P48061 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.16■□□□□ 0.98
CXCL12P48061 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CXCL12P48061 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CXCL12P48061 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CXCL12P48061 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CXCL12P48061 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.16■□□□□ 0.98
CXCL12P48061 C1QBPP2-201ENST00000528754 825 ntBASIC21.16■□□□□ 0.98
CXCL12P48061 RNF121-214ENST00000533380 870 ntTSL 3 BASIC21.16■□□□□ 0.98
CXCL12P48061 MIR4497-201ENST00000583208 89 ntBASIC21.16■□□□□ 0.98
CXCL12P48061 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CXCL12P48061 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CXCL12P48061 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CXCL12P48061 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
CXCL12P48061 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CXCL12P48061 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.15■□□□□ 0.98
CXCL12P48061 KRT17P3-201ENST00000420566 1262 ntBASIC21.15■□□□□ 0.98
CXCL12P48061 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.15■□□□□ 0.98
CXCL12P48061 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.15■□□□□ 0.98
CXCL12P48061 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CXCL12P48061 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CXCL12P48061 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.15■□□□□ 0.98
CXCL12P48061 CYP2T3P-201ENST00000601990 817 ntBASIC21.15■□□□□ 0.98
CXCL12P48061 FAM21FP-204ENST00000608637 956 ntBASIC21.15■□□□□ 0.98
CXCL12P48061 AC100791.3-201ENST00000617619 330 ntBASIC21.15■□□□□ 0.98
CXCL12P48061 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CXCL12P48061 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CXCL12P48061 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.14■□□□□ 0.98
CXCL12P48061 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.14■□□□□ 0.98
CXCL12P48061 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
CXCL12P48061 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CXCL12P48061 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.14■□□□□ 0.97
CXCL12P48061 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.14■□□□□ 0.97
CXCL12P48061 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
CXCL12P48061 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.14■□□□□ 0.97
CXCL12P48061 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.14■□□□□ 0.97
CXCL12P48061 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.14■□□□□ 0.97
CXCL12P48061 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.14■□□□□ 0.97
CXCL12P48061 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CXCL12P48061 AC073912.3-201ENST00000624414 853 ntBASIC21.14■□□□□ 0.97
CXCL12P48061 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
CXCL12P48061 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CXCL12P48061 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CXCL12P48061 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CXCL12P48061 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CXCL12P48061 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CXCL12P48061 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.13■□□□□ 0.97
CXCL12P48061 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.13■□□□□ 0.97
CXCL12P48061 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CXCL12P48061 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
CXCL12P48061 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CXCL12P48061 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CXCL12P48061 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CXCL12P48061 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.13■□□□□ 0.97
CXCL12P48061 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CXCL12P48061 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CXCL12P48061 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CXCL12P48061 AC137767.1-201ENST00000602918 1920 ntBASIC21.12■□□□□ 0.97
CXCL12P48061 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CXCL12P48061 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.12■□□□□ 0.97
CXCL12P48061 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CXCL12P48061 CDV3P1-201ENST00000471403 739 ntBASIC21.12■□□□□ 0.97
CXCL12P48061 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CXCL12P48061 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.12■□□□□ 0.97
CXCL12P48061 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CXCL12P48061 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CXCL12P48061 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CXCL12P48061 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CXCL12P48061 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms