Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.78■□□□□ 0.76
SOX3P41225 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.78■□□□□ 0.76
SOX3P41225 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.78■□□□□ 0.76
SOX3P41225 KRT18P61-201ENST00000585825 1298 ntBASIC19.78■□□□□ 0.76
SOX3P41225 AC022517.1-201ENST00000592429 346 ntBASIC19.78■□□□□ 0.76
SOX3P41225 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.78■□□□□ 0.76
SOX3P41225 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SOX3P41225 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
SOX3P41225 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SOX3P41225 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SOX3P41225 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SOX3P41225 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
SOX3P41225 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.78■□□□□ 0.76
SOX3P41225 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SOX3P41225 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.77■□□□□ 0.76
SOX3P41225 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.77■□□□□ 0.76
SOX3P41225 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
SOX3P41225 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
SOX3P41225 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SOX3P41225 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.77■□□□□ 0.76
SOX3P41225 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SOX3P41225 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.77■□□□□ 0.76
SOX3P41225 AL034346.1-201ENST00000568244 1277 ntBASIC19.77■□□□□ 0.76
SOX3P41225 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.77■□□□□ 0.76
SOX3P41225 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SOX3P41225 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SOX3P41225 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SOX3P41225 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.77■□□□□ 0.75
SOX3P41225 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.77■□□□□ 0.75
SOX3P41225 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.76■□□□□ 0.75
SOX3P41225 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.76■□□□□ 0.75
SOX3P41225 AC004854.2-201ENST00000608450 1441 ntBASIC19.76■□□□□ 0.75
SOX3P41225 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.76■□□□□ 0.75
SOX3P41225 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
SOX3P41225 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.76■□□□□ 0.75
SOX3P41225 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SOX3P41225 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SOX3P41225 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SOX3P41225 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.76■□□□□ 0.75
SOX3P41225 IKBKGP1-201ENST00000612193 1073 ntBASIC19.76■□□□□ 0.75
SOX3P41225 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SOX3P41225 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.76■□□□□ 0.75
SOX3P41225 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SOX3P41225 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SOX3P41225 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.76■□□□□ 0.75
SOX3P41225 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SOX3P41225 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
SOX3P41225 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.75■□□□□ 0.75
SOX3P41225 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SOX3P41225 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX3P41225 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.75■□□□□ 0.75
SOX3P41225 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX3P41225 AP004607.4-201ENST00000530158 1459 ntBASIC19.75■□□□□ 0.75
SOX3P41225 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX3P41225 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SOX3P41225 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.75■□□□□ 0.75
SOX3P41225 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX3P41225 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
SOX3P41225 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.75■□□□□ 0.75
SOX3P41225 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
SOX3P41225 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.75■□□□□ 0.75
SOX3P41225 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.75■□□□□ 0.75
SOX3P41225 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.75■□□□□ 0.75
SOX3P41225 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.75■□□□□ 0.75
SOX3P41225 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.75■□□□□ 0.75
SOX3P41225 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.75■□□□□ 0.75
SOX3P41225 AC073130.3-201ENST00000624389 2278 ntBASIC19.75■□□□□ 0.75
SOX3P41225 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SOX3P41225 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX3P41225 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX3P41225 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.75■□□□□ 0.75
SOX3P41225 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX3P41225 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SOX3P41225 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SOX3P41225 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX3P41225 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SOX3P41225 AC055733.4-201ENST00000638462 1354 ntBASIC19.74■□□□□ 0.75
SOX3P41225 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.74■□□□□ 0.75
SOX3P41225 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
SOX3P41225 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.74■□□□□ 0.75
SOX3P41225 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.74■□□□□ 0.75
SOX3P41225 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.74■□□□□ 0.75
SOX3P41225 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SOX3P41225 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX3P41225 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SOX3P41225 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX3P41225 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.74■□□□□ 0.75
SOX3P41225 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.74■□□□□ 0.75
SOX3P41225 AC005229.4-201ENST00000610085 2198 ntBASIC19.74■□□□□ 0.75
SOX3P41225 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
SOX3P41225 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
SOX3P41225 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SOX3P41225 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SOX3P41225 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX3P41225 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX3P41225 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX3P41225 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SOX3P41225 AC010542.4-201ENST00000563151 1910 ntBASIC19.73■□□□□ 0.75
SOX3P41225 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
SOX3P41225 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms