Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.79■□□□□ 0.92
SNX3O60493 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
SNX3O60493 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.79■□□□□ 0.92
SNX3O60493 MIR4449-201ENST00000578365 66 ntBASIC20.79■□□□□ 0.92
SNX3O60493 MIR6722-201ENST00000617286 78 ntBASIC20.79■□□□□ 0.92
SNX3O60493 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.79■□□□□ 0.92
SNX3O60493 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SNX3O60493 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SNX3O60493 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SNX3O60493 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
SNX3O60493 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SNX3O60493 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SNX3O60493 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SNX3O60493 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SNX3O60493 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SNX3O60493 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
SNX3O60493 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SNX3O60493 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
SNX3O60493 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SNX3O60493 AL162377.1-201ENST00000618844 1793 ntBASIC20.78■□□□□ 0.92
SNX3O60493 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SNX3O60493 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SNX3O60493 PVT1-219ENST00000523427 938 ntTSL 3 BASIC20.78■□□□□ 0.92
SNX3O60493 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
SNX3O60493 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SNX3O60493 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SNX3O60493 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.78■□□□□ 0.92
SNX3O60493 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
SNX3O60493 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SNX3O60493 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
SNX3O60493 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SNX3O60493 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SNX3O60493 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
SNX3O60493 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SNX3O60493 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SNX3O60493 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SNX3O60493 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.77■□□□□ 0.92
SNX3O60493 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
SNX3O60493 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SNX3O60493 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SNX3O60493 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SNX3O60493 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SNX3O60493 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
SNX3O60493 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SNX3O60493 AC018445.3-201ENST00000624177 1945 ntBASIC20.76■□□□□ 0.91
SNX3O60493 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.76■□□□□ 0.91
SNX3O60493 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.76■□□□□ 0.91
SNX3O60493 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SNX3O60493 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SNX3O60493 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.76■□□□□ 0.91
SNX3O60493 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SNX3O60493 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SNX3O60493 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SNX3O60493 AC009102.2-201ENST00000606772 1639 ntBASIC20.76■□□□□ 0.91
SNX3O60493 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SNX3O60493 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SNX3O60493 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
SNX3O60493 KRT18P60-201ENST00000312876 1297 ntBASIC20.76■□□□□ 0.91
SNX3O60493 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SNX3O60493 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.76■□□□□ 0.91
SNX3O60493 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.76■□□□□ 0.91
SNX3O60493 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.76■□□□□ 0.91
SNX3O60493 AL499627.2-201ENST00000606283 725 ntBASIC20.76■□□□□ 0.91
SNX3O60493 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.76■□□□□ 0.91
SNX3O60493 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SNX3O60493 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SNX3O60493 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SNX3O60493 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SNX3O60493 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.76■□□□□ 0.91
SNX3O60493 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.75■□□□□ 0.91
SNX3O60493 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.75■□□□□ 0.91
SNX3O60493 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.75■□□□□ 0.91
SNX3O60493 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SNX3O60493 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.75■□□□□ 0.91
SNX3O60493 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SNX3O60493 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SNX3O60493 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SNX3O60493 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.75■□□□□ 0.91
SNX3O60493 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.75■□□□□ 0.91
SNX3O60493 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.75■□□□□ 0.91
SNX3O60493 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SNX3O60493 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.75■□□□□ 0.91
SNX3O60493 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SNX3O60493 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
SNX3O60493 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SNX3O60493 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SNX3O60493 BX323043.1-201ENST00000641006 1765 ntBASIC20.74■□□□□ 0.91
SNX3O60493 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SNX3O60493 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SNX3O60493 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SNX3O60493 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SNX3O60493 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.74■□□□□ 0.91
SNX3O60493 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SNX3O60493 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SNX3O60493 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
SNX3O60493 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.74■□□□□ 0.91
SNX3O60493 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SNX3O60493 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.74■□□□□ 0.91
SNX3O60493 PVT1_1.1-201ENST00000615125 194 ntBASIC20.74■□□□□ 0.91
SNX3O60493 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms