Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
SENP3Q9H4L4 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
SENP3Q9H4L4 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC30.81■■■□□ 2.52
SENP3Q9H4L4 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC30.81■■■□□ 2.52
SENP3Q9H4L4 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
SENP3Q9H4L4 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC30.81■■■□□ 2.52
SENP3Q9H4L4 PPP1R14BP2-201ENST00000426284 444 ntBASIC30.81■■■□□ 2.52
SENP3Q9H4L4 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC30.81■■■□□ 2.52
SENP3Q9H4L4 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC30.81■■■□□ 2.52
SENP3Q9H4L4 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC30.81■■■□□ 2.52
SENP3Q9H4L4 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC30.81■■■□□ 2.52
SENP3Q9H4L4 AC016405.3-201ENST00000607710 860 ntBASIC30.81■■■□□ 2.52
SENP3Q9H4L4 AC069503.1-202ENST00000616576 642 ntBASIC30.81■■■□□ 2.52
SENP3Q9H4L4 MARS-234ENST00000630571 216 ntTSL 5 BASIC30.81■■■□□ 2.52
SENP3Q9H4L4 MARS-235ENST00000630803 183 ntTSL 3 BASIC30.81■■■□□ 2.52
SENP3Q9H4L4 MKRN4P-201ENST00000444706 1521 ntBASIC30.81■■■□□ 2.52
SENP3Q9H4L4 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
SENP3Q9H4L4 AC068338.2-201ENST00000563278 1430 ntBASIC30.81■■■□□ 2.52
SENP3Q9H4L4 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC30.81■■■□□ 2.52
SENP3Q9H4L4 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC30.8■■■□□ 2.52
SENP3Q9H4L4 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
SENP3Q9H4L4 NAA20-201ENST00000310450 920 ntTSL 2 BASIC30.8■■■□□ 2.52
SENP3Q9H4L4 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
SENP3Q9H4L4 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
SENP3Q9H4L4 TRMT13-201ENST00000370139 711 ntTSL 3 BASIC30.8■■■□□ 2.52
SENP3Q9H4L4 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC30.8■■■□□ 2.52
SENP3Q9H4L4 GCSHP5-201ENST00000443090 522 ntBASIC30.8■■■□□ 2.52
SENP3Q9H4L4 AC010141.2-201ENST00000452426 721 ntBASIC30.8■■■□□ 2.52
SENP3Q9H4L4 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
SENP3Q9H4L4 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC30.8■■■□□ 2.52
SENP3Q9H4L4 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC30.8■■■□□ 2.52
SENP3Q9H4L4 AC073578.4-201ENST00000623945 514 ntBASIC30.8■■■□□ 2.52
SENP3Q9H4L4 AC006963.1-201ENST00000624003 1052 ntBASIC30.8■■■□□ 2.52
SENP3Q9H4L4 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
SENP3Q9H4L4 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC30.8■■■□□ 2.52
SENP3Q9H4L4 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC30.79■■■□□ 2.52
SENP3Q9H4L4 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SENP3Q9H4L4 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC30.79■■■□□ 2.52
SENP3Q9H4L4 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC30.79■■■□□ 2.52
SENP3Q9H4L4 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SENP3Q9H4L4 SLC14A1-206ENST00000535474 1048 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SENP3Q9H4L4 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SENP3Q9H4L4 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SENP3Q9H4L4 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC30.79■■■□□ 2.52
SENP3Q9H4L4 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC30.79■■■□□ 2.52
SENP3Q9H4L4 AP004607.7-201ENST00000527152 1677 ntBASIC30.78■■■□□ 2.52
SENP3Q9H4L4 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SENP3Q9H4L4 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC30.78■■■□□ 2.52
SENP3Q9H4L4 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
SENP3Q9H4L4 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC30.78■■■□□ 2.52
SENP3Q9H4L4 RARRES2P4-201ENST00000514074 484 ntBASIC30.78■■■□□ 2.52
SENP3Q9H4L4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC30.78■■■□□ 2.52
SENP3Q9H4L4 IFT20-206ENST00000578122 834 ntTSL 2 BASIC30.78■■■□□ 2.52
SENP3Q9H4L4 FGA-203ENST00000622532 1130 ntTSL 5 BASIC30.78■■■□□ 2.52
SENP3Q9H4L4 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC30.78■■■□□ 2.52
SENP3Q9H4L4 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SENP3Q9H4L4 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
SENP3Q9H4L4 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC30.77■■■□□ 2.52
SENP3Q9H4L4 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
SENP3Q9H4L4 AC073210.2-201ENST00000430369 194 ntBASIC30.77■■■□□ 2.52
SENP3Q9H4L4 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC30.77■■■□□ 2.52
SENP3Q9H4L4 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC30.77■■■□□ 2.52
SENP3Q9H4L4 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
SENP3Q9H4L4 HAUS1P1-201ENST00000505275 832 ntBASIC30.77■■■□□ 2.52
SENP3Q9H4L4 MIR4758-201ENST00000577688 71 ntBASIC30.77■■■□□ 2.52
SENP3Q9H4L4 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC30.77■■■□□ 2.52
SENP3Q9H4L4 AC018695.4-201ENST00000602706 689 ntTSL 5 BASIC30.77■■■□□ 2.52
SENP3Q9H4L4 AC010331.1-201ENST00000611423 582 ntBASIC30.77■■■□□ 2.52
SENP3Q9H4L4 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC30.77■■■□□ 2.52
SENP3Q9H4L4 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
SENP3Q9H4L4 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC30.77■■■□□ 2.52
SENP3Q9H4L4 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
SENP3Q9H4L4 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC30.77■■■□□ 2.52
SENP3Q9H4L4 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC30.76■■■□□ 2.51
SENP3Q9H4L4 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
SENP3Q9H4L4 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC30.76■■■□□ 2.51
SENP3Q9H4L4 CCDC152-202ENST00000388827 1237 ntTSL 2 BASIC30.76■■■□□ 2.51
SENP3Q9H4L4 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC30.76■■■□□ 2.51
SENP3Q9H4L4 PLLP-204ENST00000569059 665 ntTSL 3 BASIC30.76■■■□□ 2.51
SENP3Q9H4L4 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC30.76■■■□□ 2.51
SENP3Q9H4L4 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
SENP3Q9H4L4 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC30.76■■■□□ 2.51
SENP3Q9H4L4 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC30.76■■■□□ 2.51
SENP3Q9H4L4 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC30.76■■■□□ 2.51
SENP3Q9H4L4 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
SENP3Q9H4L4 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC30.75■■■□□ 2.51
SENP3Q9H4L4 OR2X1P-201ENST00000421144 687 ntBASIC30.75■■■□□ 2.51
SENP3Q9H4L4 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC30.75■■■□□ 2.51
SENP3Q9H4L4 AC122134.1-202ENST00000569111 1201 ntBASIC30.75■■■□□ 2.51
SENP3Q9H4L4 RPAP2P1-201ENST00000603626 1168 ntBASIC30.75■■■□□ 2.51
SENP3Q9H4L4 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC30.75■■■□□ 2.51
SENP3Q9H4L4 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC30.75■■■□□ 2.51
SENP3Q9H4L4 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC30.75■■■□□ 2.51
SENP3Q9H4L4 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC30.75■■■□□ 2.51
SENP3Q9H4L4 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC30.75■■■□□ 2.51
SENP3Q9H4L4 CREM-210ENST00000374721 2020 ntTSL 5 BASIC30.74■■■□□ 2.51
SENP3Q9H4L4 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SENP3Q9H4L4 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC30.74■■■□□ 2.51
SENP3Q9H4L4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC30.74■■■□□ 2.51
SENP3Q9H4L4 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC30.74■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms