Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS50Q96JG6 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS50Q96JG6 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
VPS50Q96JG6 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.57■□□□□ 0.88
VPS50Q96JG6 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS50Q96JG6 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS50Q96JG6 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS50Q96JG6 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS50Q96JG6 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS50Q96JG6 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS50Q96JG6 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS50Q96JG6 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS50Q96JG6 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS50Q96JG6 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS50Q96JG6 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS50Q96JG6 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS50Q96JG6 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS50Q96JG6 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS50Q96JG6 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS50Q96JG6 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS50Q96JG6 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS50Q96JG6 AC105233.4-201ENST00000642045 216 ntBASIC20.56■□□□□ 0.88
VPS50Q96JG6 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS50Q96JG6 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS50Q96JG6 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
VPS50Q96JG6 AC005229.4-201ENST00000610085 2198 ntBASIC20.56■□□□□ 0.88
VPS50Q96JG6 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS50Q96JG6 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS50Q96JG6 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS50Q96JG6 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS50Q96JG6 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS50Q96JG6 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
VPS50Q96JG6 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS50Q96JG6 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
VPS50Q96JG6 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.55■□□□□ 0.88
VPS50Q96JG6 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS50Q96JG6 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.55■□□□□ 0.88
VPS50Q96JG6 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS50Q96JG6 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS50Q96JG6 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.55■□□□□ 0.88
VPS50Q96JG6 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
VPS50Q96JG6 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
VPS50Q96JG6 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS50Q96JG6 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS50Q96JG6 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS50Q96JG6 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
VPS50Q96JG6 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS50Q96JG6 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.54■□□□□ 0.88
VPS50Q96JG6 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
VPS50Q96JG6 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS50Q96JG6 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS50Q96JG6 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
VPS50Q96JG6 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS50Q96JG6 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS50Q96JG6 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS50Q96JG6 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.54■□□□□ 0.88
VPS50Q96JG6 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS50Q96JG6 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS50Q96JG6 LINC02228-203ENST00000641970 1355 ntBASIC20.54■□□□□ 0.88
VPS50Q96JG6 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS50Q96JG6 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS50Q96JG6 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS50Q96JG6 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
VPS50Q96JG6 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS50Q96JG6 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
VPS50Q96JG6 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
VPS50Q96JG6 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS50Q96JG6 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS50Q96JG6 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS50Q96JG6 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS50Q96JG6 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS50Q96JG6 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS50Q96JG6 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS50Q96JG6 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS50Q96JG6 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.53■□□□□ 0.88
VPS50Q96JG6 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS50Q96JG6 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS50Q96JG6 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS50Q96JG6 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS50Q96JG6 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS50Q96JG6 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
VPS50Q96JG6 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS50Q96JG6 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS50Q96JG6 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS50Q96JG6 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS50Q96JG6 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.52■□□□□ 0.88
VPS50Q96JG6 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS50Q96JG6 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.52■□□□□ 0.88
VPS50Q96JG6 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
VPS50Q96JG6 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.52■□□□□ 0.88
VPS50Q96JG6 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS50Q96JG6 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
VPS50Q96JG6 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS50Q96JG6 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
VPS50Q96JG6 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.52■□□□□ 0.88
VPS50Q96JG6 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
VPS50Q96JG6 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS50Q96JG6 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS50Q96JG6 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
VPS50Q96JG6 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms