Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.1■□□□□ 0.81
UBE3DQ7Z6J8 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.1■□□□□ 0.81
UBE3DQ7Z6J8 KRT18P14-201ENST00000534205 1250 ntBASIC20.1■□□□□ 0.81
UBE3DQ7Z6J8 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
UBE3DQ7Z6J8 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.1■□□□□ 0.81
UBE3DQ7Z6J8 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.1■□□□□ 0.81
UBE3DQ7Z6J8 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.1■□□□□ 0.81
UBE3DQ7Z6J8 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
UBE3DQ7Z6J8 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.1■□□□□ 0.81
UBE3DQ7Z6J8 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.09■□□□□ 0.81
UBE3DQ7Z6J8 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
UBE3DQ7Z6J8 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.09■□□□□ 0.81
UBE3DQ7Z6J8 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.09■□□□□ 0.81
UBE3DQ7Z6J8 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
UBE3DQ7Z6J8 AC053503.5-201ENST00000601508 636 ntBASIC20.09■□□□□ 0.81
UBE3DQ7Z6J8 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
UBE3DQ7Z6J8 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
UBE3DQ7Z6J8 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
UBE3DQ7Z6J8 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
UBE3DQ7Z6J8 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
UBE3DQ7Z6J8 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
UBE3DQ7Z6J8 KRT87P-202ENST00000534226 1464 ntBASIC20.08■□□□□ 0.81
UBE3DQ7Z6J8 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.08■□□□□ 0.81
UBE3DQ7Z6J8 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
UBE3DQ7Z6J8 AC097381.1-201ENST00000429019 1296 ntBASIC20.08■□□□□ 0.81
UBE3DQ7Z6J8 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
UBE3DQ7Z6J8 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
UBE3DQ7Z6J8 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
UBE3DQ7Z6J8 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.08■□□□□ 0.8
UBE3DQ7Z6J8 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.08■□□□□ 0.8
UBE3DQ7Z6J8 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
UBE3DQ7Z6J8 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
UBE3DQ7Z6J8 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 DUX4L2-201ENST00000561772 1275 ntBASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 AC087623.3-201ENST00000607047 1098 ntBASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 MIR6821-201ENST00000617625 74 ntBASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 DUX4L6-201ENST00000626483 1275 ntBASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 DUX4L1-201ENST00000627662 1275 ntBASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 DUX4L8-201ENST00000629013 1275 ntBASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 DUX4L3-201ENST00000630187 1275 ntBASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 DUX4L7-201ENST00000630678 1275 ntBASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 DUX4L5-201ENST00000630834 1275 ntBASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
UBE3DQ7Z6J8 FEM1AP4-201ENST00000443167 1987 ntBASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 AC026271.2-201ENST00000428091 497 ntBASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 KRT18P61-201ENST00000585825 1298 ntBASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 AL137060.1-201ENST00000618151 2648 ntBASIC20.06■□□□□ 0.8
UBE3DQ7Z6J8 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
UBE3DQ7Z6J8 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.04■□□□□ 0.8
UBE3DQ7Z6J8 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
UBE3DQ7Z6J8 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
UBE3DQ7Z6J8 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
UBE3DQ7Z6J8 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.04■□□□□ 0.8
UBE3DQ7Z6J8 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
UBE3DQ7Z6J8 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.04■□□□□ 0.8
UBE3DQ7Z6J8 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
UBE3DQ7Z6J8 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.04■□□□□ 0.8
UBE3DQ7Z6J8 AL024507.2-201ENST00000606070 2574 ntBASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms