Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.18■□□□□ 0.66
FOXF1Q12946 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
FOXF1Q12946 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
FOXF1Q12946 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
FOXF1Q12946 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXF1Q12946 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXF1Q12946 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXF1Q12946 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
FOXF1Q12946 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXF1Q12946 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.17■□□□□ 0.66
FOXF1Q12946 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXF1Q12946 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXF1Q12946 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXF1Q12946 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.17■□□□□ 0.66
FOXF1Q12946 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.17■□□□□ 0.66
FOXF1Q12946 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.17■□□□□ 0.66
FOXF1Q12946 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.17■□□□□ 0.66
FOXF1Q12946 KRT18P61-201ENST00000585825 1298 ntBASIC19.17■□□□□ 0.66
FOXF1Q12946 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.17■□□□□ 0.66
FOXF1Q12946 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.17■□□□□ 0.66
FOXF1Q12946 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
FOXF1Q12946 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXF1Q12946 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXF1Q12946 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXF1Q12946 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXF1Q12946 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXF1Q12946 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXF1Q12946 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXF1Q12946 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.16■□□□□ 0.66
FOXF1Q12946 AC053503.5-201ENST00000601508 636 ntBASIC19.16■□□□□ 0.66
FOXF1Q12946 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXF1Q12946 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXF1Q12946 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXF1Q12946 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.16■□□□□ 0.66
FOXF1Q12946 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXF1Q12946 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXF1Q12946 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXF1Q12946 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXF1Q12946 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXF1Q12946 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
FOXF1Q12946 AP004607.4-201ENST00000530158 1459 ntBASIC19.16■□□□□ 0.66
FOXF1Q12946 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXF1Q12946 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXF1Q12946 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
FOXF1Q12946 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXF1Q12946 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXF1Q12946 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXF1Q12946 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXF1Q12946 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.15■□□□□ 0.66
FOXF1Q12946 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.15■□□□□ 0.66
FOXF1Q12946 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.15■□□□□ 0.66
FOXF1Q12946 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.15■□□□□ 0.66
FOXF1Q12946 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
FOXF1Q12946 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.15■□□□□ 0.66
FOXF1Q12946 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.15■□□□□ 0.66
FOXF1Q12946 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.15■□□□□ 0.66
FOXF1Q12946 NTF6G-201ENST00000591094 616 ntBASIC19.15■□□□□ 0.66
FOXF1Q12946 AC104187.1-201ENST00000607510 612 ntBASIC19.15■□□□□ 0.66
FOXF1Q12946 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXF1Q12946 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.15■□□□□ 0.66
FOXF1Q12946 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.15■□□□□ 0.66
FOXF1Q12946 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXF1Q12946 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXF1Q12946 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXF1Q12946 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
FOXF1Q12946 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXF1Q12946 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXF1Q12946 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXF1Q12946 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
FOXF1Q12946 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.14■□□□□ 0.66
FOXF1Q12946 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
FOXF1Q12946 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.14■□□□□ 0.66
FOXF1Q12946 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXF1Q12946 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXF1Q12946 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
FOXF1Q12946 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXF1Q12946 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXF1Q12946 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXF1Q12946 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXF1Q12946 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXF1Q12946 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXF1Q12946 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXF1Q12946 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXF1Q12946 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXF1Q12946 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.14■□□□□ 0.65
FOXF1Q12946 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
FOXF1Q12946 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.14■□□□□ 0.65
FOXF1Q12946 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
FOXF1Q12946 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.14■□□□□ 0.65
FOXF1Q12946 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.14■□□□□ 0.65
FOXF1Q12946 KRT18P5-201ENST00000436075 1291 ntBASIC19.14■□□□□ 0.65
FOXF1Q12946 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.14■□□□□ 0.65
FOXF1Q12946 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.14■□□□□ 0.65
FOXF1Q12946 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.14■□□□□ 0.65
FOXF1Q12946 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.14■□□□□ 0.65
FOXF1Q12946 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.14■□□□□ 0.65
FOXF1Q12946 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.14■□□□□ 0.65
FOXF1Q12946 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.14■□□□□ 0.65
FOXF1Q12946 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
FOXF1Q12946 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms