Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 STX7-201ENST00000367937 1090 ntTSL 5 BASIC23.35■■□□□ 1.33
PEX3P56589 DBI-210ENST00000542275 757 ntTSL 5 BASIC23.35■■□□□ 1.33
PEX3P56589 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.35■■□□□ 1.33
PEX3P56589 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PEX3P56589 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC23.35■■□□□ 1.33
PEX3P56589 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PEX3P56589 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
PEX3P56589 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.35■■□□□ 1.33
PEX3P56589 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC23.35■■□□□ 1.33
PEX3P56589 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PEX3P56589 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
PEX3P56589 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
PEX3P56589 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC23.34■■□□□ 1.33
PEX3P56589 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC23.34■■□□□ 1.33
PEX3P56589 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC23.34■■□□□ 1.33
PEX3P56589 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC23.34■■□□□ 1.33
PEX3P56589 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
PEX3P56589 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PEX3P56589 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC23.34■■□□□ 1.33
PEX3P56589 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
PEX3P56589 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
PEX3P56589 ME3-201ENST00000323418 1068 ntTSL 5 BASIC23.33■■□□□ 1.33
PEX3P56589 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC23.33■■□□□ 1.33
PEX3P56589 AC010141.2-201ENST00000452426 721 ntBASIC23.33■■□□□ 1.33
PEX3P56589 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
PEX3P56589 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC23.33■■□□□ 1.33
PEX3P56589 AC137761.2-201ENST00000561729 223 ntBASIC23.33■■□□□ 1.33
PEX3P56589 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC23.33■■□□□ 1.33
PEX3P56589 AC145350.3-201ENST00000569033 163 ntBASIC23.33■■□□□ 1.33
PEX3P56589 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
PEX3P56589 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
PEX3P56589 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PEX3P56589 LINC00565-201ENST00000562710 2331 ntBASIC23.32■■□□□ 1.32
PEX3P56589 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PEX3P56589 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
PEX3P56589 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC23.32■■□□□ 1.32
PEX3P56589 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC23.32■■□□□ 1.32
PEX3P56589 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC23.32■■□□□ 1.32
PEX3P56589 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC23.32■■□□□ 1.32
PEX3P56589 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
PEX3P56589 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
PEX3P56589 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
PEX3P56589 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC23.31■■□□□ 1.32
PEX3P56589 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
PEX3P56589 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
PEX3P56589 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC23.31■■□□□ 1.32
PEX3P56589 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC23.31■■□□□ 1.32
PEX3P56589 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC23.31■■□□□ 1.32
PEX3P56589 AC092437.1-201ENST00000624794 1048 ntBASIC23.31■■□□□ 1.32
PEX3P56589 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
PEX3P56589 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
PEX3P56589 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC23.31■■□□□ 1.32
PEX3P56589 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
PEX3P56589 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
PEX3P56589 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC23.3■■□□□ 1.32
PEX3P56589 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
PEX3P56589 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
PEX3P56589 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PEX3P56589 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC23.3■■□□□ 1.32
PEX3P56589 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
PEX3P56589 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
PEX3P56589 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PEX3P56589 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PEX3P56589 NAA20-201ENST00000310450 920 ntTSL 2 BASIC23.3■■□□□ 1.32
PEX3P56589 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC23.3■■□□□ 1.32
PEX3P56589 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC23.3■■□□□ 1.32
PEX3P56589 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC23.3■■□□□ 1.32
PEX3P56589 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC23.3■■□□□ 1.32
PEX3P56589 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PEX3P56589 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
PEX3P56589 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC23.3■■□□□ 1.32
PEX3P56589 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC23.29■■□□□ 1.32
PEX3P56589 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
PEX3P56589 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PEX3P56589 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
PEX3P56589 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
PEX3P56589 AC016769.1-201ENST00000409132 1010 ntBASIC23.29■■□□□ 1.32
PEX3P56589 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
PEX3P56589 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
PEX3P56589 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
PEX3P56589 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
PEX3P56589 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC23.29■■□□□ 1.32
PEX3P56589 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC23.29■■□□□ 1.32
PEX3P56589 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PEX3P56589 BID-212ENST00000614949 1988 ntTSL 5 BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms