Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
PTPN9P43378 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC22.05■■□□□ 1.12
PTPN9P43378 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC22.05■■□□□ 1.12
PTPN9P43378 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PTPN9P43378 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC22.05■■□□□ 1.12
PTPN9P43378 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
PTPN9P43378 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
PTPN9P43378 RARG-204ENST00000543726 1779 ntTSL 2 BASIC22.04■■□□□ 1.12
PTPN9P43378 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
PTPN9P43378 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
PTPN9P43378 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC22.04■■□□□ 1.12
PTPN9P43378 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC22.04■■□□□ 1.12
PTPN9P43378 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC22.04■■□□□ 1.12
PTPN9P43378 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC22.04■■□□□ 1.12
PTPN9P43378 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
PTPN9P43378 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTPN9P43378 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTPN9P43378 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC22.03■■□□□ 1.12
PTPN9P43378 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
PTPN9P43378 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTPN9P43378 CLDN5-201ENST00000403084 2357 ntBASIC22.03■■□□□ 1.12
PTPN9P43378 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC22.03■■□□□ 1.12
PTPN9P43378 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTPN9P43378 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC22.03■■□□□ 1.12
PTPN9P43378 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTPN9P43378 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTPN9P43378 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
PTPN9P43378 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC22.03■■□□□ 1.12
PTPN9P43378 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTPN9P43378 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC22.03■■□□□ 1.12
PTPN9P43378 AC007375.3-201ENST00000600936 2314 ntBASIC22.03■■□□□ 1.12
PTPN9P43378 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTPN9P43378 STX5-203ENST00000394690 1568 ntTSL 5 BASIC22.03■■□□□ 1.12
PTPN9P43378 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
PTPN9P43378 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC22.02■■□□□ 1.12
PTPN9P43378 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC22.02■■□□□ 1.12
PTPN9P43378 AC097381.1-201ENST00000429019 1296 ntBASIC22.02■■□□□ 1.12
PTPN9P43378 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC22.02■■□□□ 1.12
PTPN9P43378 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
PTPN9P43378 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC22.02■■□□□ 1.11
PTPN9P43378 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
PTPN9P43378 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PTPN9P43378 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
PTPN9P43378 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
PTPN9P43378 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC22.01■■□□□ 1.11
PTPN9P43378 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PTPN9P43378 MIR6821-201ENST00000617625 74 ntBASIC22.01■■□□□ 1.11
PTPN9P43378 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
PTPN9P43378 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC22.01■■□□□ 1.11
PTPN9P43378 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
PTPN9P43378 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC22.01■■□□□ 1.11
PTPN9P43378 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PTPN9P43378 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PTPN9P43378 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PTPN9P43378 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
PTPN9P43378 DYM-203ENST00000442713 2147 ntTSL 2 BASIC22■■□□□ 1.11
PTPN9P43378 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC22■■□□□ 1.11
PTPN9P43378 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
PTPN9P43378 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
PTPN9P43378 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
PTPN9P43378 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
PTPN9P43378 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC22■■□□□ 1.11
PTPN9P43378 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC22■■□□□ 1.11
PTPN9P43378 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
PTPN9P43378 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
PTPN9P43378 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC22■■□□□ 1.11
PTPN9P43378 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22■■□□□ 1.11
PTPN9P43378 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
PTPN9P43378 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.99■■□□□ 1.11
PTPN9P43378 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
PTPN9P43378 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTPN9P43378 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTPN9P43378 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
PTPN9P43378 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.99■■□□□ 1.11
PTPN9P43378 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.99■■□□□ 1.11
PTPN9P43378 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTPN9P43378 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTPN9P43378 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTPN9P43378 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.99■■□□□ 1.11
PTPN9P43378 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
PTPN9P43378 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.99■■□□□ 1.11
PTPN9P43378 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
PTPN9P43378 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTPN9P43378 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTPN9P43378 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PTPN9P43378 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTPN9P43378 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.98■■□□□ 1.11
PTPN9P43378 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
PTPN9P43378 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.98■■□□□ 1.11
PTPN9P43378 DUX4L2-201ENST00000561772 1275 ntBASIC21.98■■□□□ 1.11
PTPN9P43378 AC138907.5-202ENST00000569484 235 ntBASIC21.98■■□□□ 1.11
PTPN9P43378 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.98■■□□□ 1.11
PTPN9P43378 DUX4L6-201ENST00000626483 1275 ntBASIC21.98■■□□□ 1.11
PTPN9P43378 DUX4L1-201ENST00000627662 1275 ntBASIC21.98■■□□□ 1.11
PTPN9P43378 DUX4L8-201ENST00000629013 1275 ntBASIC21.98■■□□□ 1.11
PTPN9P43378 DUX4L3-201ENST00000630187 1275 ntBASIC21.98■■□□□ 1.11
PTPN9P43378 DUX4L7-201ENST00000630678 1275 ntBASIC21.98■■□□□ 1.11
PTPN9P43378 DUX4L5-201ENST00000630834 1275 ntBASIC21.98■■□□□ 1.11
PTPN9P43378 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
PTPN9P43378 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms