Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSX1P28360 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
MSX1P28360 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.36■□□□□ 0.69
MSX1P28360 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSX1P28360 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
MSX1P28360 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.35■□□□□ 0.69
MSX1P28360 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.35■□□□□ 0.69
MSX1P28360 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSX1P28360 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.35■□□□□ 0.69
MSX1P28360 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSX1P28360 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.35■□□□□ 0.69
MSX1P28360 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MSX1P28360 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSX1P28360 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.35■□□□□ 0.69
MSX1P28360 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.35■□□□□ 0.69
MSX1P28360 RAP2CP1-201ENST00000605103 478 ntBASIC19.35■□□□□ 0.69
MSX1P28360 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.35■□□□□ 0.69
MSX1P28360 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MSX1P28360 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.35■□□□□ 0.69
MSX1P28360 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
MSX1P28360 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MSX1P28360 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
MSX1P28360 KRT87P-202ENST00000534226 1464 ntBASIC19.35■□□□□ 0.69
MSX1P28360 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
MSX1P28360 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.34■□□□□ 0.69
MSX1P28360 AC026471.6-201ENST00000622954 1905 ntBASIC19.34■□□□□ 0.69
MSX1P28360 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.34■□□□□ 0.69
MSX1P28360 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
MSX1P28360 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MSX1P28360 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
MSX1P28360 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSX1P28360 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
MSX1P28360 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
MSX1P28360 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSX1P28360 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.33■□□□□ 0.69
MSX1P28360 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSX1P28360 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
MSX1P28360 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
MSX1P28360 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.33■□□□□ 0.69
MSX1P28360 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
MSX1P28360 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSX1P28360 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MSX1P28360 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSX1P28360 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.33■□□□□ 0.68
MSX1P28360 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.33■□□□□ 0.68
MSX1P28360 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.33■□□□□ 0.68
MSX1P28360 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
MSX1P28360 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.33■□□□□ 0.68
MSX1P28360 AC073111.5-205ENST00000641717 521 ntBASIC19.33■□□□□ 0.68
MSX1P28360 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MSX1P28360 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.33■□□□□ 0.68
MSX1P28360 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSX1P28360 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MSX1P28360 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
MSX1P28360 AC010542.4-201ENST00000563151 1910 ntBASIC19.33■□□□□ 0.68
MSX1P28360 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.33■□□□□ 0.68
MSX1P28360 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.33■□□□□ 0.68
MSX1P28360 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSX1P28360 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.32■□□□□ 0.68
MSX1P28360 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
MSX1P28360 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSX1P28360 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSX1P28360 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSX1P28360 CDCA4P2-201ENST00000441182 718 ntBASIC19.32■□□□□ 0.68
MSX1P28360 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.32■□□□□ 0.68
MSX1P28360 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.32■□□□□ 0.68
MSX1P28360 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.32■□□□□ 0.68
MSX1P28360 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.32■□□□□ 0.68
MSX1P28360 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.32■□□□□ 0.68
MSX1P28360 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MSX1P28360 AC053503.5-201ENST00000601508 636 ntBASIC19.32■□□□□ 0.68
MSX1P28360 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
MSX1P28360 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
MSX1P28360 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.32■□□□□ 0.68
MSX1P28360 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.32■□□□□ 0.68
MSX1P28360 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MSX1P28360 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MSX1P28360 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.31■□□□□ 0.68
MSX1P28360 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSX1P28360 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.31■□□□□ 0.68
MSX1P28360 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.31■□□□□ 0.68
MSX1P28360 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
MSX1P28360 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.31■□□□□ 0.68
MSX1P28360 EEF1DP3-203ENST00000566025 782 ntBASIC19.31■□□□□ 0.68
MSX1P28360 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.31■□□□□ 0.68
MSX1P28360 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.31■□□□□ 0.68
MSX1P28360 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSX1P28360 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MSX1P28360 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
MSX1P28360 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MSX1P28360 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.31■□□□□ 0.68
MSX1P28360 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.31■□□□□ 0.68
MSX1P28360 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MSX1P28360 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MSX1P28360 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MSX1P28360 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.3■□□□□ 0.68
MSX1P28360 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
MSX1P28360 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.3■□□□□ 0.68
MSX1P28360 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.3■□□□□ 0.68
MSX1P28360 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms