Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.54■□□□□ 0.88
PCNAP12004 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.54■□□□□ 0.88
PCNAP12004 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.54■□□□□ 0.88
PCNAP12004 AC104564.3-201ENST00000582367 638 ntBASIC20.54■□□□□ 0.88
PCNAP12004 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCNAP12004 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.54■□□□□ 0.88
PCNAP12004 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCNAP12004 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.54■□□□□ 0.88
PCNAP12004 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCNAP12004 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.54■□□□□ 0.88
PCNAP12004 AC244015.2-201ENST00000616358 1861 ntBASIC20.54■□□□□ 0.88
PCNAP12004 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCNAP12004 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.54■□□□□ 0.88
PCNAP12004 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.53■□□□□ 0.88
PCNAP12004 AC005229.4-201ENST00000610085 2198 ntBASIC20.53■□□□□ 0.88
PCNAP12004 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCNAP12004 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.53■□□□□ 0.88
PCNAP12004 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PCNAP12004 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
PCNAP12004 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.53■□□□□ 0.88
PCNAP12004 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCNAP12004 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCNAP12004 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.53■□□□□ 0.88
PCNAP12004 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PCNAP12004 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCNAP12004 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCNAP12004 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCNAP12004 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PCNAP12004 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.53■□□□□ 0.88
PCNAP12004 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.52■□□□□ 0.88
PCNAP12004 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCNAP12004 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCNAP12004 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
PCNAP12004 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
PCNAP12004 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.52■□□□□ 0.88
PCNAP12004 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.52■□□□□ 0.88
PCNAP12004 AC005837.3-201ENST00000612163 286 ntBASIC20.52■□□□□ 0.88
PCNAP12004 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PCNAP12004 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PCNAP12004 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.52■□□□□ 0.88
PCNAP12004 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCNAP12004 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
PCNAP12004 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.52■□□□□ 0.87
PCNAP12004 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCNAP12004 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCNAP12004 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
PCNAP12004 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
PCNAP12004 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
PCNAP12004 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCNAP12004 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.51■□□□□ 0.87
PCNAP12004 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCNAP12004 MIR572-201ENST00000384983 95 ntBASIC20.51■□□□□ 0.87
PCNAP12004 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.51■□□□□ 0.87
PCNAP12004 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
PCNAP12004 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.51■□□□□ 0.87
PCNAP12004 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.51■□□□□ 0.87
PCNAP12004 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCNAP12004 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PCNAP12004 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCNAP12004 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
PCNAP12004 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PCNAP12004 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PCNAP12004 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCNAP12004 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.5■□□□□ 0.87
PCNAP12004 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.5■□□□□ 0.87
PCNAP12004 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCNAP12004 AP006587.3-201ENST00000525742 1516 ntBASIC20.5■□□□□ 0.87
PCNAP12004 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCNAP12004 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PCNAP12004 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.5■□□□□ 0.87
PCNAP12004 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.5■□□□□ 0.87
PCNAP12004 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.5■□□□□ 0.87
PCNAP12004 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.5■□□□□ 0.87
PCNAP12004 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
PCNAP12004 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.5■□□□□ 0.87
PCNAP12004 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.5■□□□□ 0.87
PCNAP12004 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PCNAP12004 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
PCNAP12004 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.49■□□□□ 0.87
PCNAP12004 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCNAP12004 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCNAP12004 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCNAP12004 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
PCNAP12004 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.49■□□□□ 0.87
PCNAP12004 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.49■□□□□ 0.87
PCNAP12004 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.49■□□□□ 0.87
PCNAP12004 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.49■□□□□ 0.87
PCNAP12004 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.49■□□□□ 0.87
PCNAP12004 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.49■□□□□ 0.87
PCNAP12004 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PCNAP12004 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
PCNAP12004 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
PCNAP12004 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.49■□□□□ 0.87
PCNAP12004 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.49■□□□□ 0.87
PCNAP12004 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
PCNAP12004 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
PCNAP12004 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
PCNAP12004 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.48■□□□□ 0.87
PCNAP12004 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.48■□□□□ 0.87
PCNAP12004 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms