Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.71■□□□□ 0.91
LMX1AQ8TE12 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.71■□□□□ 0.91
LMX1AQ8TE12 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.71■□□□□ 0.91
LMX1AQ8TE12 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.71■□□□□ 0.91
LMX1AQ8TE12 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
LMX1AQ8TE12 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
LMX1AQ8TE12 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.91
LMX1AQ8TE12 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 KRT18P6-201ENST00000555540 1265 ntBASIC20.7■□□□□ 0.9
LMX1AQ8TE12 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
LMX1AQ8TE12 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
LMX1AQ8TE12 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.69■□□□□ 0.9
LMX1AQ8TE12 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.69■□□□□ 0.9
LMX1AQ8TE12 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.69■□□□□ 0.9
LMX1AQ8TE12 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
LMX1AQ8TE12 AC069152.1-201ENST00000438030 544 ntBASIC20.69■□□□□ 0.9
LMX1AQ8TE12 AC007322.4-201ENST00000509611 723 ntBASIC20.69■□□□□ 0.9
LMX1AQ8TE12 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LMX1AQ8TE12 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.69■□□□□ 0.9
LMX1AQ8TE12 AC008694.1-202ENST00000636953 945 ntBASIC20.69■□□□□ 0.9
LMX1AQ8TE12 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.69■□□□□ 0.9
LMX1AQ8TE12 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LMX1AQ8TE12 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
LMX1AQ8TE12 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.69■□□□□ 0.9
LMX1AQ8TE12 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LMX1AQ8TE12 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
LMX1AQ8TE12 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
LMX1AQ8TE12 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1AQ8TE12 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1AQ8TE12 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
LMX1AQ8TE12 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
LMX1AQ8TE12 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.68■□□□□ 0.9
LMX1AQ8TE12 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1AQ8TE12 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1AQ8TE12 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.68■□□□□ 0.9
LMX1AQ8TE12 AC133041.1-202ENST00000642053 222 ntBASIC20.68■□□□□ 0.9
LMX1AQ8TE12 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1AQ8TE12 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
LMX1AQ8TE12 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.68■□□□□ 0.9
LMX1AQ8TE12 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1AQ8TE12 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LMX1AQ8TE12 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 MKRN4P-201ENST00000444706 1521 ntBASIC20.67■□□□□ 0.9
LMX1AQ8TE12 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
LMX1AQ8TE12 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 TSPY20P-201ENST00000450910 630 ntBASIC20.66■□□□□ 0.9
LMX1AQ8TE12 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 AC098934.4-201ENST00000564127 592 ntBASIC20.66■□□□□ 0.9
LMX1AQ8TE12 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 AC069236.1-201ENST00000604339 616 ntBASIC20.66■□□□□ 0.9
LMX1AQ8TE12 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LMX1AQ8TE12 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms