Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPHP4O75161 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPHP4O75161 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPHP4O75161 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPHP4O75161 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC30.36■■■□□ 2.45
NPHP4O75161 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC30.36■■■□□ 2.45
NPHP4O75161 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC30.36■■■□□ 2.45
NPHP4O75161 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC30.36■■■□□ 2.45
NPHP4O75161 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC30.35■■■□□ 2.45
NPHP4O75161 AC138932.3-201ENST00000567634 1902 ntBASIC30.35■■■□□ 2.45
NPHP4O75161 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
NPHP4O75161 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC30.35■■■□□ 2.45
NPHP4O75161 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
NPHP4O75161 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC30.34■■■□□ 2.45
NPHP4O75161 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC30.34■■■□□ 2.45
NPHP4O75161 KRT16P2-201ENST00000414673 1423 ntBASIC30.34■■■□□ 2.45
NPHP4O75161 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC30.34■■■□□ 2.45
NPHP4O75161 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC30.34■■■□□ 2.45
NPHP4O75161 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC30.34■■■□□ 2.45
NPHP4O75161 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC30.34■■■□□ 2.45
NPHP4O75161 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC30.34■■■□□ 2.45
NPHP4O75161 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
NPHP4O75161 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC30.33■■■□□ 2.45
NPHP4O75161 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP4O75161 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP4O75161 ABHD17AP6-201ENST00000458502 1044 ntBASIC30.33■■■□□ 2.45
NPHP4O75161 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC30.33■■■□□ 2.45
NPHP4O75161 AC069544.1-201ENST00000609399 999 ntBASIC30.33■■■□□ 2.45
NPHP4O75161 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP4O75161 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC30.33■■■□□ 2.45
NPHP4O75161 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP4O75161 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP4O75161 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
NPHP4O75161 POU5F1P4-201ENST00000413175 1085 ntBASIC30.32■■■□□ 2.44
NPHP4O75161 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC30.32■■■□□ 2.44
NPHP4O75161 PNMA6B-201ENST00000538162 1200 ntBASIC30.32■■■□□ 2.44
NPHP4O75161 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC30.32■■■□□ 2.44
NPHP4O75161 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC30.32■■■□□ 2.44
NPHP4O75161 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP4O75161 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP4O75161 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC30.31■■■□□ 2.44
NPHP4O75161 AL355472.2-201ENST00000422958 438 ntBASIC30.31■■■□□ 2.44
NPHP4O75161 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC30.31■■■□□ 2.44
NPHP4O75161 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP4O75161 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC30.31■■■□□ 2.44
NPHP4O75161 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP4O75161 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC30.31■■■□□ 2.44
NPHP4O75161 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
NPHP4O75161 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP4O75161 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
NPHP4O75161 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
NPHP4O75161 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC30.3■■■□□ 2.44
NPHP4O75161 AC012618.2-201ENST00000428058 849 ntBASIC30.3■■■□□ 2.44
NPHP4O75161 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC30.3■■■□□ 2.44
NPHP4O75161 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC30.3■■■□□ 2.44
NPHP4O75161 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC30.3■■■□□ 2.44
NPHP4O75161 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC30.3■■■□□ 2.44
NPHP4O75161 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
NPHP4O75161 KRT17P3-201ENST00000420566 1262 ntBASIC30.3■■■□□ 2.44
NPHP4O75161 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC30.3■■■□□ 2.44
NPHP4O75161 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC30.3■■■□□ 2.44
NPHP4O75161 CD44-222ENST00000526025 1052 ntTSL 2 BASIC30.3■■■□□ 2.44
NPHP4O75161 AL139125.2-201ENST00000623134 1869 ntBASIC30.29■■■□□ 2.44
NPHP4O75161 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC30.29■■■□□ 2.44
NPHP4O75161 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC30.29■■■□□ 2.44
NPHP4O75161 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
NPHP4O75161 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
NPHP4O75161 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
NPHP4O75161 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC30.28■■■□□ 2.44
NPHP4O75161 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
NPHP4O75161 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC30.28■■■□□ 2.44
NPHP4O75161 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
NPHP4O75161 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC30.28■■■□□ 2.44
NPHP4O75161 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
NPHP4O75161 RNF146-206ENST00000480444 843 ntTSL 2 BASIC30.28■■■□□ 2.44
NPHP4O75161 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC30.28■■■□□ 2.44
NPHP4O75161 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
NPHP4O75161 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC30.28■■■□□ 2.44
NPHP4O75161 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC30.27■■■□□ 2.44
NPHP4O75161 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP4O75161 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC30.27■■■□□ 2.44
NPHP4O75161 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP4O75161 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP4O75161 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC30.27■■■□□ 2.44
NPHP4O75161 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC30.27■■■□□ 2.44
NPHP4O75161 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC30.27■■■□□ 2.44
NPHP4O75161 AC142381.3-201ENST00000568208 1670 ntBASIC30.27■■■□□ 2.44
NPHP4O75161 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP4O75161 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP4O75161 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
NPHP4O75161 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.44
NPHP4O75161 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC30.26■■■□□ 2.44
NPHP4O75161 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC30.26■■■□□ 2.43
NPHP4O75161 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC30.26■■■□□ 2.43
NPHP4O75161 OR7E47P-201ENST00000546390 1422 ntBASIC30.26■■■□□ 2.43
NPHP4O75161 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC30.26■■■□□ 2.43
NPHP4O75161 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC30.26■■■□□ 2.43
NPHP4O75161 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.43
NPHP4O75161 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC30.26■■■□□ 2.43
NPHP4O75161 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms