Protein–RNA interactions for Protein: Q9CQ71

Rpa3, Replication protein A 14 kDa subunit, mousemouse

Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa3Q9CQ71 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa3Q9CQ71 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.78■□□□□ 0.76
Rpa3Q9CQ71 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC19.78■□□□□ 0.76
Rpa3Q9CQ71 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa3Q9CQ71 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa3Q9CQ71 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa3Q9CQ71 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa3Q9CQ71 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Rpa3Q9CQ71 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa3Q9CQ71 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC19.77■□□□□ 0.76
Rpa3Q9CQ71 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa3Q9CQ71 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa3Q9CQ71 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa3Q9CQ71 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa3Q9CQ71 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa3Q9CQ71 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa3Q9CQ71 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa3Q9CQ71 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Rpa3Q9CQ71 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Rpa3Q9CQ71 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Rpa3Q9CQ71 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpa3Q9CQ71 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpa3Q9CQ71 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC19.76■□□□□ 0.75
Rpa3Q9CQ71 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
Rpa3Q9CQ71 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Rpa3Q9CQ71 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Rpa3Q9CQ71 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Rpa3Q9CQ71 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa3Q9CQ71 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa3Q9CQ71 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa3Q9CQ71 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa3Q9CQ71 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa3Q9CQ71 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC19.75■□□□□ 0.75
Rpa3Q9CQ71 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa3Q9CQ71 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa3Q9CQ71 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa3Q9CQ71 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa3Q9CQ71 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa3Q9CQ71 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa3Q9CQ71 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Rpa3Q9CQ71 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 Gm13534-201ENSMUST00000121169 513 ntBASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Rpa3Q9CQ71 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Rpa3Q9CQ71 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpa3Q9CQ71 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC19.73■□□□□ 0.75
Rpa3Q9CQ71 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpa3Q9CQ71 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Rpa3Q9CQ71 AV356131-201ENSMUST00000206201 750 ntBASIC19.73■□□□□ 0.75
Rpa3Q9CQ71 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpa3Q9CQ71 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpa3Q9CQ71 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Rpa3Q9CQ71 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC19.72■□□□□ 0.75
Rpa3Q9CQ71 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa3Q9CQ71 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa3Q9CQ71 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa3Q9CQ71 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa3Q9CQ71 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa3Q9CQ71 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa3Q9CQ71 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa3Q9CQ71 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa3Q9CQ71 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa3Q9CQ71 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa3Q9CQ71 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Rpa3Q9CQ71 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Ap3s1-204ENSMUST00000225520 957 ntBASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
Rpa3Q9CQ71 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
Rpa3Q9CQ71 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC19.7■□□□□ 0.74
Rpa3Q9CQ71 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rpa3Q9CQ71 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rpa3Q9CQ71 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC19.7■□□□□ 0.74
Rpa3Q9CQ71 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Rpa3Q9CQ71 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms