Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VMP1Q96GC9 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.25■□□□□ 0.83
VMP1Q96GC9 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VMP1Q96GC9 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.25■□□□□ 0.83
VMP1Q96GC9 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VMP1Q96GC9 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
VMP1Q96GC9 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.25■□□□□ 0.83
VMP1Q96GC9 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VMP1Q96GC9 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VMP1Q96GC9 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VMP1Q96GC9 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VMP1Q96GC9 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VMP1Q96GC9 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.24■□□□□ 0.83
VMP1Q96GC9 AC027612.3-201ENST00000413684 1047 ntBASIC20.24■□□□□ 0.83
VMP1Q96GC9 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.24■□□□□ 0.83
VMP1Q96GC9 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.24■□□□□ 0.83
VMP1Q96GC9 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.24■□□□□ 0.83
VMP1Q96GC9 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
VMP1Q96GC9 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.24■□□□□ 0.83
VMP1Q96GC9 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.24■□□□□ 0.83
VMP1Q96GC9 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
VMP1Q96GC9 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VMP1Q96GC9 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VMP1Q96GC9 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
VMP1Q96GC9 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VMP1Q96GC9 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VMP1Q96GC9 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.24■□□□□ 0.83
VMP1Q96GC9 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VMP1Q96GC9 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VMP1Q96GC9 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VMP1Q96GC9 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
VMP1Q96GC9 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
VMP1Q96GC9 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
VMP1Q96GC9 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VMP1Q96GC9 AC026271.2-201ENST00000428091 497 ntBASIC20.23■□□□□ 0.83
VMP1Q96GC9 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VMP1Q96GC9 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VMP1Q96GC9 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.23■□□□□ 0.83
VMP1Q96GC9 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VMP1Q96GC9 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
VMP1Q96GC9 MIR6821-201ENST00000617625 74 ntBASIC20.23■□□□□ 0.83
VMP1Q96GC9 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VMP1Q96GC9 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VMP1Q96GC9 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VMP1Q96GC9 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
VMP1Q96GC9 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VMP1Q96GC9 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
VMP1Q96GC9 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VMP1Q96GC9 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VMP1Q96GC9 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VMP1Q96GC9 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VMP1Q96GC9 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
VMP1Q96GC9 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VMP1Q96GC9 AC097381.1-201ENST00000429019 1296 ntBASIC20.22■□□□□ 0.83
VMP1Q96GC9 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.22■□□□□ 0.83
VMP1Q96GC9 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VMP1Q96GC9 MIR6084-201ENST00000622012 110 ntBASIC20.22■□□□□ 0.83
VMP1Q96GC9 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VMP1Q96GC9 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VMP1Q96GC9 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VMP1Q96GC9 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
VMP1Q96GC9 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.21■□□□□ 0.83
VMP1Q96GC9 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.21■□□□□ 0.83
VMP1Q96GC9 YBX1P1-201ENST00000445822 960 ntBASIC20.21■□□□□ 0.83
VMP1Q96GC9 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.21■□□□□ 0.83
VMP1Q96GC9 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.21■□□□□ 0.83
VMP1Q96GC9 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
VMP1Q96GC9 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
VMP1Q96GC9 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.21■□□□□ 0.83
VMP1Q96GC9 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VMP1Q96GC9 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VMP1Q96GC9 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VMP1Q96GC9 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.2■□□□□ 0.82
VMP1Q96GC9 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.2■□□□□ 0.82
VMP1Q96GC9 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VMP1Q96GC9 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VMP1Q96GC9 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.2■□□□□ 0.82
VMP1Q96GC9 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.2■□□□□ 0.82
VMP1Q96GC9 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VMP1Q96GC9 FBXW4P1-201ENST00000426721 2239 ntBASIC20.2■□□□□ 0.82
VMP1Q96GC9 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
VMP1Q96GC9 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
VMP1Q96GC9 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VMP1Q96GC9 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.2■□□□□ 0.82
VMP1Q96GC9 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
VMP1Q96GC9 C11orf96-202ENST00000528572 1834 ntBASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms