Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
SCN4AP35499 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
SCN4AP35499 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC25.58■■□□□ 1.69
SCN4AP35499 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC25.58■■□□□ 1.69
SCN4AP35499 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC25.58■■□□□ 1.69
SCN4AP35499 AC008175.2-201ENST00000612840 297 ntBASIC25.58■■□□□ 1.69
SCN4AP35499 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC25.58■■□□□ 1.69
SCN4AP35499 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
SCN4AP35499 EED-207ENST00000528180 1745 ntTSL 5 BASIC25.58■■□□□ 1.69
SCN4AP35499 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC25.58■■□□□ 1.69
SCN4AP35499 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SCN4AP35499 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
SCN4AP35499 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC25.58■■□□□ 1.68
SCN4AP35499 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC25.58■■□□□ 1.68
SCN4AP35499 AL591742.1-201ENST00000604433 565 ntBASIC25.58■■□□□ 1.68
SCN4AP35499 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
SCN4AP35499 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC25.58■■□□□ 1.68
SCN4AP35499 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
SCN4AP35499 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC25.57■■□□□ 1.68
SCN4AP35499 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC25.57■■□□□ 1.68
SCN4AP35499 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
SCN4AP35499 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC25.57■■□□□ 1.68
SCN4AP35499 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC25.57■■□□□ 1.68
SCN4AP35499 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC25.57■■□□□ 1.68
SCN4AP35499 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
SCN4AP35499 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
SCN4AP35499 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC25.56■■□□□ 1.68
SCN4AP35499 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC25.56■■□□□ 1.68
SCN4AP35499 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC25.56■■□□□ 1.68
SCN4AP35499 CD44-222ENST00000526025 1052 ntTSL 2 BASIC25.56■■□□□ 1.68
SCN4AP35499 BX088651.1-201ENST00000540551 451 ntBASIC25.56■■□□□ 1.68
SCN4AP35499 CYP2T3P-201ENST00000601990 817 ntBASIC25.56■■□□□ 1.68
SCN4AP35499 AC069544.1-201ENST00000609399 999 ntBASIC25.56■■□□□ 1.68
SCN4AP35499 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
SCN4AP35499 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SCN4AP35499 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SCN4AP35499 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC25.56■■□□□ 1.68
SCN4AP35499 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC25.56■■□□□ 1.68
SCN4AP35499 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.68
SCN4AP35499 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC25.56■■□□□ 1.68
SCN4AP35499 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
SCN4AP35499 PBX1-209ENST00000485769 834 ntTSL 2 BASIC25.56■■□□□ 1.68
SCN4AP35499 AC243732.1-201ENST00000612648 864 ntBASIC25.56■■□□□ 1.68
SCN4AP35499 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SCN4AP35499 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC25.55■■□□□ 1.68
SCN4AP35499 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
SCN4AP35499 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC25.55■■□□□ 1.68
SCN4AP35499 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC25.55■■□□□ 1.68
SCN4AP35499 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
SCN4AP35499 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC25.55■■□□□ 1.68
SCN4AP35499 REXO1L12P-201ENST00000622156 912 ntBASIC25.55■■□□□ 1.68
SCN4AP35499 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
SCN4AP35499 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SCN4AP35499 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SCN4AP35499 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
SCN4AP35499 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
SCN4AP35499 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC25.54■■□□□ 1.68
SCN4AP35499 KRT17P3-201ENST00000420566 1262 ntBASIC25.54■■□□□ 1.68
SCN4AP35499 KRT18P21-201ENST00000515767 1272 ntBASIC25.54■■□□□ 1.68
SCN4AP35499 PNMA6B-201ENST00000538162 1200 ntBASIC25.54■■□□□ 1.68
SCN4AP35499 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
SCN4AP35499 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SCN4AP35499 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC25.54■■□□□ 1.68
SCN4AP35499 KRT17P1-201ENST00000399211 1546 ntBASIC25.54■■□□□ 1.68
SCN4AP35499 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
SCN4AP35499 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SCN4AP35499 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SCN4AP35499 POU5F1P4-201ENST00000413175 1085 ntBASIC25.53■■□□□ 1.68
SCN4AP35499 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC25.53■■□□□ 1.68
SCN4AP35499 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SCN4AP35499 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
SCN4AP35499 Z99916.2-201ENST00000604037 246 ntBASIC25.53■■□□□ 1.68
SCN4AP35499 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC25.53■■□□□ 1.68
SCN4AP35499 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC25.53■■□□□ 1.68
SCN4AP35499 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SCN4AP35499 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC25.53■■□□□ 1.68
SCN4AP35499 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
SCN4AP35499 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
SCN4AP35499 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC25.53■■□□□ 1.68
SCN4AP35499 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
SCN4AP35499 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC25.53■■□□□ 1.68
SCN4AP35499 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
SCN4AP35499 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SCN4AP35499 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC25.52■■□□□ 1.68
SCN4AP35499 LSM12P1-201ENST00000411836 588 ntBASIC25.52■■□□□ 1.68
SCN4AP35499 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC25.52■■□□□ 1.68
SCN4AP35499 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SCN4AP35499 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SCN4AP35499 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SCN4AP35499 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
SCN4AP35499 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
SCN4AP35499 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SCN4AP35499 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.52■■□□□ 1.68
SCN4AP35499 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
SCN4AP35499 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
SCN4AP35499 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC25.51■■□□□ 1.67
SCN4AP35499 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
SCN4AP35499 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC25.51■■□□□ 1.67
SCN4AP35499 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
SCN4AP35499 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms