Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCNAP12004 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.66■□□□□ 0.9
PCNAP12004 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.66■□□□□ 0.9
PCNAP12004 AF213884.3-201ENST00000563833 479 ntBASIC20.66■□□□□ 0.9
PCNAP12004 AL139246.5-201ENST00000606645 996 ntBASIC20.66■□□□□ 0.9
PCNAP12004 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PCNAP12004 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.66■□□□□ 0.9
PCNAP12004 AP004607.7-201ENST00000527152 1677 ntBASIC20.66■□□□□ 0.9
PCNAP12004 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.66■□□□□ 0.9
PCNAP12004 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.66■□□□□ 0.9
PCNAP12004 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
PCNAP12004 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.66■□□□□ 0.9
PCNAP12004 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
PCNAP12004 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PCNAP12004 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PCNAP12004 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.65■□□□□ 0.9
PCNAP12004 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.65■□□□□ 0.9
PCNAP12004 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCNAP12004 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
PCNAP12004 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCNAP12004 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCNAP12004 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCNAP12004 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
PCNAP12004 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.65■□□□□ 0.9
PCNAP12004 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.65■□□□□ 0.9
PCNAP12004 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PCNAP12004 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
PCNAP12004 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCNAP12004 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
PCNAP12004 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.65■□□□□ 0.9
PCNAP12004 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
PCNAP12004 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.64■□□□□ 0.9
PCNAP12004 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.64■□□□□ 0.9
PCNAP12004 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.64■□□□□ 0.9
PCNAP12004 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
PCNAP12004 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.64■□□□□ 0.89
PCNAP12004 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCNAP12004 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.64■□□□□ 0.89
PCNAP12004 TSPY26P-201ENST00000476365 1326 ntBASIC20.64■□□□□ 0.89
PCNAP12004 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
PCNAP12004 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.64■□□□□ 0.89
PCNAP12004 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
PCNAP12004 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
PCNAP12004 AC026471.6-201ENST00000622954 1905 ntBASIC20.64■□□□□ 0.89
PCNAP12004 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.64■□□□□ 0.89
PCNAP12004 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 AC133561.4-201ENST00000566112 224 ntBASIC20.63■□□□□ 0.89
PCNAP12004 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.63■□□□□ 0.89
PCNAP12004 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
PCNAP12004 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.63■□□□□ 0.89
PCNAP12004 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
PCNAP12004 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.63■□□□□ 0.89
PCNAP12004 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PCNAP12004 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
PCNAP12004 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.62■□□□□ 0.89
PCNAP12004 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PCNAP12004 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PCNAP12004 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.62■□□□□ 0.89
PCNAP12004 AL034346.1-201ENST00000568244 1277 ntBASIC20.62■□□□□ 0.89
PCNAP12004 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCNAP12004 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.62■□□□□ 0.89
PCNAP12004 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PCNAP12004 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PCNAP12004 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCNAP12004 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCNAP12004 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PCNAP12004 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PCNAP12004 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCNAP12004 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCNAP12004 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCNAP12004 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCNAP12004 MIR939-201ENST00000401314 82 ntBASIC20.61■□□□□ 0.89
PCNAP12004 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.61■□□□□ 0.89
PCNAP12004 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCNAP12004 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCNAP12004 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCNAP12004 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.61■□□□□ 0.89
PCNAP12004 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCNAP12004 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PCNAP12004 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PCNAP12004 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCNAP12004 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PCNAP12004 RASA4CP-201ENST00000424092 1398 ntBASIC20.6■□□□□ 0.89
PCNAP12004 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
PCNAP12004 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PCNAP12004 AC091305.1-201ENST00000479476 895 ntBASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms