Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AF106564.1-201ENST00000607058 2553 ntBASIC28.64■■■□□ 2.18
SENP3-EIF4A1A0A087X0R7 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC28.64■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC28.63■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC28.63■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC28.63■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC28.63■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC28.63■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC28.62■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC28.62■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC28.62■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 GRAMD4P2-201ENST00000423297 1097 ntBASIC28.62■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 AC010141.3-201ENST00000456659 717 ntBASIC28.62■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC28.62■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 TSPY26P-201ENST00000476365 1326 ntBASIC28.62■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC28.61■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC28.61■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 AC026310.3-201ENST00000625186 2373 ntBASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 GXYLT1P2-201ENST00000433312 1230 ntBASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 DET1-205ENST00000558413 583 ntTSL 4 BASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 OR7E47P-201ENST00000546390 1422 ntBASIC28.6■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 AK1-201ENST00000223836 736 ntTSL 3 BASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 TSPY20P-201ENST00000450910 630 ntBASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 AC027682.1-201ENST00000562846 899 ntBASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 AC005229.4-201ENST00000610085 2198 ntBASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC28.59■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC28.58■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC28.58■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC28.58■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC28.58■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC28.58■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 OXCT2P1-201ENST00000447263 1535 ntBASIC28.58■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
SENP3-EIF4A1A0A087X0R7 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC28.57■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC28.57■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC28.57■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC28.57■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.57■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 DUX4L2-201ENST00000561772 1275 ntBASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 DUX4L6-201ENST00000626483 1275 ntBASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 DUX4L1-201ENST00000627662 1275 ntBASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 DUX4L8-201ENST00000629013 1275 ntBASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 DUX4L3-201ENST00000630187 1275 ntBASIC28.56■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms