Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 AC010542.4-201ENST00000563151 1910 ntBASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CHMP1AQ9HD42 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 AC009299.2-201ENST00000482477 511 ntBASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 CA15P2-201ENST00000611168 834 ntBASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 AL117332.1-201ENST00000622628 974 ntBASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.25■□□□□ 0.51
CHMP1AQ9HD42 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHMP1AQ9HD42 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 MIR6724-1-201ENST00000616420 92 ntBASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 MIR6724-2-201ENST00000616483 92 ntBASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 MIR6724-4-201ENST00000617390 92 ntBASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 MIR6724-3-201ENST00000622482 92 ntBASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CHMP1AQ9HD42 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CHMP1AQ9HD42 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHMP1AQ9HD42 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms