Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.47■□□□□ 0.87
COL28A1Q2UY09 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.47■□□□□ 0.87
COL28A1Q2UY09 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
COL28A1Q2UY09 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.47■□□□□ 0.87
COL28A1Q2UY09 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL28A1Q2UY09 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.47■□□□□ 0.87
COL28A1Q2UY09 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.47■□□□□ 0.87
COL28A1Q2UY09 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL28A1Q2UY09 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.46■□□□□ 0.87
COL28A1Q2UY09 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
COL28A1Q2UY09 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.46■□□□□ 0.87
COL28A1Q2UY09 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.46■□□□□ 0.87
COL28A1Q2UY09 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL28A1Q2UY09 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL28A1Q2UY09 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL28A1Q2UY09 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.46■□□□□ 0.87
COL28A1Q2UY09 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL28A1Q2UY09 ECEL1P3-201ENST00000427961 737 ntBASIC20.46■□□□□ 0.87
COL28A1Q2UY09 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL28A1Q2UY09 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL28A1Q2UY09 AC104187.1-201ENST00000607510 612 ntBASIC20.46■□□□□ 0.87
COL28A1Q2UY09 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.46■□□□□ 0.87
COL28A1Q2UY09 AC092068.2-201ENST00000590491 1708 ntBASIC20.46■□□□□ 0.87
COL28A1Q2UY09 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL28A1Q2UY09 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL28A1Q2UY09 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
COL28A1Q2UY09 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL28A1Q2UY09 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL28A1Q2UY09 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL28A1Q2UY09 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
COL28A1Q2UY09 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.45■□□□□ 0.86
COL28A1Q2UY09 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL28A1Q2UY09 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL28A1Q2UY09 ESRRAP1-201ENST00000400596 1257 ntBASIC20.45■□□□□ 0.86
COL28A1Q2UY09 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.45■□□□□ 0.86
COL28A1Q2UY09 UNC93B4-201ENST00000505679 747 ntBASIC20.45■□□□□ 0.86
COL28A1Q2UY09 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.45■□□□□ 0.86
COL28A1Q2UY09 AC092118.2-201ENST00000613495 667 ntBASIC20.45■□□□□ 0.86
COL28A1Q2UY09 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL28A1Q2UY09 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL28A1Q2UY09 AC144652.1-201ENST00000609974 1624 ntBASIC20.45■□□□□ 0.86
COL28A1Q2UY09 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 FAM210CP-201ENST00000445714 574 ntBASIC20.44■□□□□ 0.86
COL28A1Q2UY09 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.44■□□□□ 0.86
COL28A1Q2UY09 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.43■□□□□ 0.86
COL28A1Q2UY09 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL28A1Q2UY09 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.42■□□□□ 0.86
COL28A1Q2UY09 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.42■□□□□ 0.86
COL28A1Q2UY09 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.41■□□□□ 0.86
COL28A1Q2UY09 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms