Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AL136967.2-201ENST00000623968 743 ntBASIC19.98■□□□□ 0.79
RFX3P48380 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.98■□□□□ 0.79
RFX3P48380 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
RFX3P48380 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.98■□□□□ 0.79
RFX3P48380 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
RFX3P48380 FBXW4P1-201ENST00000426721 2239 ntBASIC19.98■□□□□ 0.79
RFX3P48380 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
RFX3P48380 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.97■□□□□ 0.79
RFX3P48380 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.97■□□□□ 0.79
RFX3P48380 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.97■□□□□ 0.79
RFX3P48380 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
RFX3P48380 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.97■□□□□ 0.79
RFX3P48380 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
RFX3P48380 MIR638-201ENST00000385237 100 ntBASIC19.97■□□□□ 0.79
RFX3P48380 AC133561.4-201ENST00000566112 224 ntBASIC19.97■□□□□ 0.79
RFX3P48380 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.97■□□□□ 0.79
RFX3P48380 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
RFX3P48380 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
RFX3P48380 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
RFX3P48380 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
RFX3P48380 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.97■□□□□ 0.79
RFX3P48380 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
RFX3P48380 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.97■□□□□ 0.79
RFX3P48380 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
RFX3P48380 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
RFX3P48380 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RFX3P48380 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
RFX3P48380 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
RFX3P48380 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
RFX3P48380 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RFX3P48380 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RFX3P48380 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.96■□□□□ 0.79
RFX3P48380 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RFX3P48380 SUDS3P1-201ENST00000505831 966 ntBASIC19.96■□□□□ 0.79
RFX3P48380 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.96■□□□□ 0.79
RFX3P48380 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.96■□□□□ 0.79
RFX3P48380 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
RFX3P48380 AL024507.2-201ENST00000606070 2574 ntBASIC19.96■□□□□ 0.79
RFX3P48380 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RFX3P48380 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
RFX3P48380 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.96■□□□□ 0.79
RFX3P48380 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
RFX3P48380 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
RFX3P48380 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.95■□□□□ 0.78
RFX3P48380 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RFX3P48380 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RFX3P48380 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RFX3P48380 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
RFX3P48380 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
RFX3P48380 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.95■□□□□ 0.78
RFX3P48380 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
RFX3P48380 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.95■□□□□ 0.78
RFX3P48380 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.95■□□□□ 0.78
RFX3P48380 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RFX3P48380 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
RFX3P48380 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
RFX3P48380 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.94■□□□□ 0.78
RFX3P48380 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
RFX3P48380 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
RFX3P48380 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
RFX3P48380 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.94■□□□□ 0.78
RFX3P48380 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
RFX3P48380 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.94■□□□□ 0.78
RFX3P48380 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.94■□□□□ 0.78
RFX3P48380 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
RFX3P48380 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.94■□□□□ 0.78
RFX3P48380 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
RFX3P48380 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
RFX3P48380 FAM99A-202ENST00000538190 1989 ntBASIC19.94■□□□□ 0.78
RFX3P48380 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RFX3P48380 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RFX3P48380 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
RFX3P48380 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RFX3P48380 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RFX3P48380 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.93■□□□□ 0.78
RFX3P48380 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
RFX3P48380 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.93■□□□□ 0.78
RFX3P48380 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
RFX3P48380 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.93■□□□□ 0.78
RFX3P48380 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
RFX3P48380 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.93■□□□□ 0.78
RFX3P48380 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.93■□□□□ 0.78
RFX3P48380 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.93■□□□□ 0.78
RFX3P48380 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
RFX3P48380 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.93■□□□□ 0.78
RFX3P48380 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
RFX3P48380 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RFX3P48380 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.92■□□□□ 0.78
RFX3P48380 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
RFX3P48380 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
RFX3P48380 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RFX3P48380 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RFX3P48380 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
RFX3P48380 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
RFX3P48380 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
RFX3P48380 AP004607.7-201ENST00000527152 1677 ntBASIC19.92■□□□□ 0.78
RFX3P48380 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
RFX3P48380 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.92■□□□□ 0.78
RFX3P48380 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.92■□□□□ 0.78
RFX3P48380 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms