Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SOX3P41225 AC139530.1-201ENST00000575312 1977 ntBASIC20.02■□□□□ 0.8
SOX3P41225 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.02■□□□□ 0.8
SOX3P41225 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX3P41225 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
SOX3P41225 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.02■□□□□ 0.79
SOX3P41225 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
SOX3P41225 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
SOX3P41225 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.01■□□□□ 0.79
SOX3P41225 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SOX3P41225 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SOX3P41225 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SOX3P41225 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SOX3P41225 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SOX3P41225 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
SOX3P41225 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SOX3P41225 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20■□□□□ 0.79
SOX3P41225 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20■□□□□ 0.79
SOX3P41225 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20■□□□□ 0.79
SOX3P41225 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SOX3P41225 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SOX3P41225 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
SOX3P41225 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SOX3P41225 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20■□□□□ 0.79
SOX3P41225 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20■□□□□ 0.79
SOX3P41225 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20■□□□□ 0.79
SOX3P41225 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20■□□□□ 0.79
SOX3P41225 SLC25A24-204ENST00000569674 2357 ntBASIC20■□□□□ 0.79
SOX3P41225 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20■□□□□ 0.79
SOX3P41225 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SOX3P41225 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SOX3P41225 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SOX3P41225 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
SOX3P41225 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SOX3P41225 FBXW4P1-201ENST00000426721 2239 ntBASIC19.99■□□□□ 0.79
SOX3P41225 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SOX3P41225 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.99■□□□□ 0.79
SOX3P41225 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SOX3P41225 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SOX3P41225 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.99■□□□□ 0.79
SOX3P41225 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.99■□□□□ 0.79
SOX3P41225 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SOX3P41225 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.99■□□□□ 0.79
SOX3P41225 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SOX3P41225 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SOX3P41225 AC092053.2-201ENST00000640557 1818 ntBASIC19.99■□□□□ 0.79
SOX3P41225 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SOX3P41225 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.99■□□□□ 0.79
SOX3P41225 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.99■□□□□ 0.79
SOX3P41225 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
SOX3P41225 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SOX3P41225 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SOX3P41225 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SOX3P41225 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.98■□□□□ 0.79
SOX3P41225 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SOX3P41225 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.98■□□□□ 0.79
SOX3P41225 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.98■□□□□ 0.79
SOX3P41225 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.98■□□□□ 0.79
SOX3P41225 AC034268.1-201ENST00000441047 882 ntBASIC19.98■□□□□ 0.79
SOX3P41225 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.98■□□□□ 0.79
SOX3P41225 CCDC92B-201ENST00000575506 885 ntBASIC19.98■□□□□ 0.79
SOX3P41225 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SOX3P41225 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SOX3P41225 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
SOX3P41225 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SOX3P41225 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.98■□□□□ 0.79
SOX3P41225 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SOX3P41225 LINC02228-203ENST00000641970 1355 ntBASIC19.97■□□□□ 0.79
SOX3P41225 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.97■□□□□ 0.79
SOX3P41225 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SOX3P41225 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SOX3P41225 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SOX3P41225 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
SOX3P41225 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
SOX3P41225 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
SOX3P41225 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.97■□□□□ 0.79
SOX3P41225 AL162430.1-201ENST00000480705 870 ntBASIC19.97■□□□□ 0.79
SOX3P41225 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.97■□□□□ 0.79
SOX3P41225 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SOX3P41225 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SOX3P41225 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
SOX3P41225 BX005040.4-201ENST00000637145 1518 ntBASIC19.97■□□□□ 0.79
SOX3P41225 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SOX3P41225 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
SOX3P41225 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SOX3P41225 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
SOX3P41225 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
SOX3P41225 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
SOX3P41225 AC079089.2-201ENST00000531211 1277 ntBASIC19.96■□□□□ 0.79
SOX3P41225 DUX4L2-201ENST00000561772 1275 ntBASIC19.96■□□□□ 0.79
SOX3P41225 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.96■□□□□ 0.79
SOX3P41225 DUX4L6-201ENST00000626483 1275 ntBASIC19.96■□□□□ 0.79
SOX3P41225 DUX4L1-201ENST00000627662 1275 ntBASIC19.96■□□□□ 0.79
SOX3P41225 DUX4L8-201ENST00000629013 1275 ntBASIC19.96■□□□□ 0.79
SOX3P41225 DUX4L3-201ENST00000630187 1275 ntBASIC19.96■□□□□ 0.79
SOX3P41225 DUX4L7-201ENST00000630678 1275 ntBASIC19.96■□□□□ 0.79
SOX3P41225 DUX4L5-201ENST00000630834 1275 ntBASIC19.96■□□□□ 0.79
SOX3P41225 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.96■□□□□ 0.79
SOX3P41225 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
SOX3P41225 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms