Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.22■□□□□ 0.99
MSH3P20585 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH3P20585 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH3P20585 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MSH3P20585 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH3P20585 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
MSH3P20585 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH3P20585 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH3P20585 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH3P20585 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH3P20585 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.21■□□□□ 0.99
MSH3P20585 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH3P20585 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH3P20585 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH3P20585 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH3P20585 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
MSH3P20585 AC123595.1-201ENST00000440769 1046 ntBASIC21.21■□□□□ 0.99
MSH3P20585 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.21■□□□□ 0.99
MSH3P20585 TPRG1LP1-201ENST00000598702 760 ntBASIC21.21■□□□□ 0.99
MSH3P20585 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
MSH3P20585 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH3P20585 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
MSH3P20585 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH3P20585 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH3P20585 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH3P20585 LINC02228-203ENST00000641970 1355 ntBASIC21.21■□□□□ 0.99
MSH3P20585 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH3P20585 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
MSH3P20585 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
MSH3P20585 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH3P20585 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH3P20585 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH3P20585 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH3P20585 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.2■□□□□ 0.98
MSH3P20585 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
MSH3P20585 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.2■□□□□ 0.98
MSH3P20585 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.2■□□□□ 0.98
MSH3P20585 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
MSH3P20585 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH3P20585 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH3P20585 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
MSH3P20585 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.19■□□□□ 0.98
MSH3P20585 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH3P20585 AC005224.4-201ENST00000583262 1652 ntBASIC21.19■□□□□ 0.98
MSH3P20585 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
MSH3P20585 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH3P20585 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH3P20585 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH3P20585 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
MSH3P20585 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.19■□□□□ 0.98
MSH3P20585 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.19■□□□□ 0.98
MSH3P20585 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH3P20585 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH3P20585 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH3P20585 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.19■□□□□ 0.98
MSH3P20585 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.19■□□□□ 0.98
MSH3P20585 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
MSH3P20585 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH3P20585 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH3P20585 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH3P20585 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH3P20585 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH3P20585 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH3P20585 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH3P20585 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.18■□□□□ 0.98
MSH3P20585 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH3P20585 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.18■□□□□ 0.98
MSH3P20585 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH3P20585 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH3P20585 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.18■□□□□ 0.98
MSH3P20585 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
MSH3P20585 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
MSH3P20585 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH3P20585 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH3P20585 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.17■□□□□ 0.98
MSH3P20585 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
MSH3P20585 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
MSH3P20585 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSH3P20585 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.17■□□□□ 0.98
MSH3P20585 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSH3P20585 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.17■□□□□ 0.98
MSH3P20585 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.17■□□□□ 0.98
MSH3P20585 AP006587.3-201ENST00000525742 1516 ntBASIC21.17■□□□□ 0.98
MSH3P20585 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSH3P20585 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.17■□□□□ 0.98
MSH3P20585 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH3P20585 FAM99A-202ENST00000538190 1989 ntBASIC21.17■□□□□ 0.98
MSH3P20585 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH3P20585 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH3P20585 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
MSH3P20585 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSH3P20585 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.17■□□□□ 0.98
MSH3P20585 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
MSH3P20585 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.17■□□□□ 0.98
MSH3P20585 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSH3P20585 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH3P20585 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.16■□□□□ 0.98
MSH3P20585 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MSH3P20585 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
MSH3P20585 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms