Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.83■■□□□ 1.09
CBX4O00257 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.83■■□□□ 1.09
CBX4O00257 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CBX4O00257 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
CBX4O00257 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CBX4O00257 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CBX4O00257 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
CBX4O00257 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CBX4O00257 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CBX4O00257 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.82■■□□□ 1.08
CBX4O00257 AC004854.2-201ENST00000608450 1441 ntBASIC21.82■■□□□ 1.08
CBX4O00257 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.82■■□□□ 1.08
CBX4O00257 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.82■■□□□ 1.08
CBX4O00257 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.82■■□□□ 1.08
CBX4O00257 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.82■■□□□ 1.08
CBX4O00257 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.82■■□□□ 1.08
CBX4O00257 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
CBX4O00257 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.82■■□□□ 1.08
CBX4O00257 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.82■■□□□ 1.08
CBX4O00257 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.82■■□□□ 1.08
CBX4O00257 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.82■■□□□ 1.08
CBX4O00257 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CBX4O00257 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CBX4O00257 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CBX4O00257 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CBX4O00257 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CBX4O00257 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CBX4O00257 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
CBX4O00257 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CBX4O00257 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CBX4O00257 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CBX4O00257 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
CBX4O00257 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
CBX4O00257 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CBX4O00257 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.81■■□□□ 1.08
CBX4O00257 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.81■■□□□ 1.08
CBX4O00257 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.81■■□□□ 1.08
CBX4O00257 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.81■■□□□ 1.08
CBX4O00257 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CBX4O00257 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CBX4O00257 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CBX4O00257 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CBX4O00257 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CBX4O00257 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CBX4O00257 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CBX4O00257 AP004607.4-201ENST00000530158 1459 ntBASIC21.8■■□□□ 1.08
CBX4O00257 KRT87P-202ENST00000534226 1464 ntBASIC21.8■■□□□ 1.08
CBX4O00257 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CBX4O00257 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CBX4O00257 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.8■■□□□ 1.08
CBX4O00257 KRT18P61-201ENST00000585825 1298 ntBASIC21.8■■□□□ 1.08
CBX4O00257 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CBX4O00257 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CBX4O00257 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CBX4O00257 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CBX4O00257 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
CBX4O00257 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CBX4O00257 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CBX4O00257 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.8■■□□□ 1.08
CBX4O00257 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.79■■□□□ 1.08
CBX4O00257 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CBX4O00257 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CBX4O00257 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CBX4O00257 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CBX4O00257 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.79■■□□□ 1.08
CBX4O00257 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.79■■□□□ 1.08
CBX4O00257 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CBX4O00257 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
CBX4O00257 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.79■■□□□ 1.08
CBX4O00257 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.79■■□□□ 1.08
CBX4O00257 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CBX4O00257 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.79■■□□□ 1.08
CBX4O00257 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.79■■□□□ 1.08
CBX4O00257 AL117328.2-201ENST00000624617 1940 ntBASIC21.78■■□□□ 1.08
CBX4O00257 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.78■■□□□ 1.08
CBX4O00257 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
CBX4O00257 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.78■■□□□ 1.08
CBX4O00257 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.78■■□□□ 1.08
CBX4O00257 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.78■■□□□ 1.08
CBX4O00257 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.78■■□□□ 1.08
CBX4O00257 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.78■■□□□ 1.08
CBX4O00257 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CBX4O00257 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CBX4O00257 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.78■■□□□ 1.08
CBX4O00257 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CBX4O00257 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CBX4O00257 FAM99A-202ENST00000538190 1989 ntBASIC21.78■■□□□ 1.08
CBX4O00257 ECEL1P1-201ENST00000373592 1742 ntBASIC21.77■■□□□ 1.08
CBX4O00257 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CBX4O00257 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CBX4O00257 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CBX4O00257 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CBX4O00257 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CBX4O00257 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CBX4O00257 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.77■■□□□ 1.08
CBX4O00257 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CBX4O00257 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.77■■□□□ 1.08
CBX4O00257 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.77■■□□□ 1.08
CBX4O00257 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CBX4O00257 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms