Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USE1Q9NZ43 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USE1Q9NZ43 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
USE1Q9NZ43 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USE1Q9NZ43 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
USE1Q9NZ43 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USE1Q9NZ43 KRT18P60-201ENST00000312876 1297 ntBASIC19.84■□□□□ 0.77
USE1Q9NZ43 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USE1Q9NZ43 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USE1Q9NZ43 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC19.84■□□□□ 0.77
USE1Q9NZ43 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USE1Q9NZ43 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USE1Q9NZ43 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USE1Q9NZ43 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.84■□□□□ 0.77
USE1Q9NZ43 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
USE1Q9NZ43 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
USE1Q9NZ43 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.84■□□□□ 0.77
USE1Q9NZ43 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USE1Q9NZ43 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.84■□□□□ 0.77
USE1Q9NZ43 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
USE1Q9NZ43 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
USE1Q9NZ43 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USE1Q9NZ43 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
USE1Q9NZ43 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
USE1Q9NZ43 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USE1Q9NZ43 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.83■□□□□ 0.77
USE1Q9NZ43 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
USE1Q9NZ43 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
USE1Q9NZ43 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USE1Q9NZ43 FEM1AP1-201ENST00000431297 1995 ntBASIC19.83■□□□□ 0.77
USE1Q9NZ43 OXCT2P1-201ENST00000447263 1535 ntBASIC19.83■□□□□ 0.77
USE1Q9NZ43 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USE1Q9NZ43 AC104564.3-201ENST00000582367 638 ntBASIC19.83■□□□□ 0.77
USE1Q9NZ43 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
USE1Q9NZ43 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.83■□□□□ 0.77
USE1Q9NZ43 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.83■□□□□ 0.76
USE1Q9NZ43 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
USE1Q9NZ43 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USE1Q9NZ43 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.83■□□□□ 0.76
USE1Q9NZ43 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USE1Q9NZ43 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.83■□□□□ 0.76
USE1Q9NZ43 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
USE1Q9NZ43 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
USE1Q9NZ43 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.82■□□□□ 0.76
USE1Q9NZ43 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USE1Q9NZ43 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC19.82■□□□□ 0.76
USE1Q9NZ43 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.82■□□□□ 0.76
USE1Q9NZ43 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
USE1Q9NZ43 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USE1Q9NZ43 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USE1Q9NZ43 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USE1Q9NZ43 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
USE1Q9NZ43 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USE1Q9NZ43 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USE1Q9NZ43 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USE1Q9NZ43 AC005703.6-201ENST00000623265 1329 ntBASIC19.81■□□□□ 0.76
USE1Q9NZ43 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.81■□□□□ 0.76
USE1Q9NZ43 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USE1Q9NZ43 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USE1Q9NZ43 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USE1Q9NZ43 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC19.81■□□□□ 0.76
USE1Q9NZ43 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USE1Q9NZ43 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
USE1Q9NZ43 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.81■□□□□ 0.76
USE1Q9NZ43 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USE1Q9NZ43 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.81■□□□□ 0.76
USE1Q9NZ43 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
USE1Q9NZ43 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USE1Q9NZ43 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USE1Q9NZ43 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USE1Q9NZ43 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.8■□□□□ 0.76
USE1Q9NZ43 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USE1Q9NZ43 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USE1Q9NZ43 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
USE1Q9NZ43 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USE1Q9NZ43 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
USE1Q9NZ43 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USE1Q9NZ43 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USE1Q9NZ43 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USE1Q9NZ43 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
USE1Q9NZ43 AC026471.6-201ENST00000622954 1905 ntBASIC19.8■□□□□ 0.76
USE1Q9NZ43 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.8■□□□□ 0.76
USE1Q9NZ43 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USE1Q9NZ43 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USE1Q9NZ43 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.79■□□□□ 0.76
USE1Q9NZ43 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USE1Q9NZ43 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USE1Q9NZ43 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.79■□□□□ 0.76
USE1Q9NZ43 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
USE1Q9NZ43 AC138932.1-201ENST00000534164 6830 ntBASIC19.79■□□□□ 0.76
USE1Q9NZ43 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC19.79■□□□□ 0.76
USE1Q9NZ43 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.79■□□□□ 0.76
USE1Q9NZ43 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.79■□□□□ 0.76
USE1Q9NZ43 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC19.79■□□□□ 0.76
USE1Q9NZ43 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.79■□□□□ 0.76
USE1Q9NZ43 C17orf82-201ENST00000623772 1530 ntBASIC19.79■□□□□ 0.76
USE1Q9NZ43 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USE1Q9NZ43 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
USE1Q9NZ43 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USE1Q9NZ43 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms