Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 DUX4L8-201ENST00000629013 1275 ntBASIC19.66■□□□□ 0.74
TIMP4Q99727 DUX4L3-201ENST00000630187 1275 ntBASIC19.66■□□□□ 0.74
TIMP4Q99727 DUX4L7-201ENST00000630678 1275 ntBASIC19.66■□□□□ 0.74
TIMP4Q99727 DUX4L5-201ENST00000630834 1275 ntBASIC19.66■□□□□ 0.74
TIMP4Q99727 LINC02228-203ENST00000641970 1355 ntBASIC19.66■□□□□ 0.74
TIMP4Q99727 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
TIMP4Q99727 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TIMP4Q99727 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
TIMP4Q99727 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.66■□□□□ 0.74
TIMP4Q99727 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.65■□□□□ 0.74
TIMP4Q99727 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.65■□□□□ 0.74
TIMP4Q99727 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TIMP4Q99727 CCDC92B-201ENST00000575506 885 ntBASIC19.65■□□□□ 0.74
TIMP4Q99727 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TIMP4Q99727 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
TIMP4Q99727 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TIMP4Q99727 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.65■□□□□ 0.74
TIMP4Q99727 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.64■□□□□ 0.74
TIMP4Q99727 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
TIMP4Q99727 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
TIMP4Q99727 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.64■□□□□ 0.73
TIMP4Q99727 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TIMP4Q99727 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.64■□□□□ 0.73
TIMP4Q99727 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
TIMP4Q99727 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
TIMP4Q99727 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.64■□□□□ 0.73
TIMP4Q99727 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TIMP4Q99727 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TIMP4Q99727 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
TIMP4Q99727 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TIMP4Q99727 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.63■□□□□ 0.73
TIMP4Q99727 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TIMP4Q99727 OXCT2P1-201ENST00000447263 1535 ntBASIC19.63■□□□□ 0.73
TIMP4Q99727 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TIMP4Q99727 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TIMP4Q99727 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.63■□□□□ 0.73
TIMP4Q99727 TERF1P2-201ENST00000583350 1212 ntBASIC19.63■□□□□ 0.73
TIMP4Q99727 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
TIMP4Q99727 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.63■□□□□ 0.73
TIMP4Q99727 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.63■□□□□ 0.73
TIMP4Q99727 AC026310.3-201ENST00000625186 2373 ntBASIC19.63■□□□□ 0.73
TIMP4Q99727 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
TIMP4Q99727 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TIMP4Q99727 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TIMP4Q99727 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TIMP4Q99727 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TIMP4Q99727 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.62■□□□□ 0.73
TIMP4Q99727 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
TIMP4Q99727 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
TIMP4Q99727 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.62■□□□□ 0.73
TIMP4Q99727 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.62■□□□□ 0.73
TIMP4Q99727 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TIMP4Q99727 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TIMP4Q99727 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TIMP4Q99727 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.62■□□□□ 0.73
TIMP4Q99727 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.62■□□□□ 0.73
TIMP4Q99727 KRT18P5-201ENST00000436075 1291 ntBASIC19.62■□□□□ 0.73
TIMP4Q99727 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TIMP4Q99727 KRT18P14-201ENST00000534205 1250 ntBASIC19.62■□□□□ 0.73
TIMP4Q99727 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
TIMP4Q99727 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TIMP4Q99727 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TIMP4Q99727 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
TIMP4Q99727 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TIMP4Q99727 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TIMP4Q99727 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.61■□□□□ 0.73
TIMP4Q99727 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TIMP4Q99727 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TIMP4Q99727 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TIMP4Q99727 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TIMP4Q99727 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TIMP4Q99727 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
TIMP4Q99727 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TIMP4Q99727 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.61■□□□□ 0.73
TIMP4Q99727 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
TIMP4Q99727 SMUG1P1-201ENST00000590640 811 ntBASIC19.61■□□□□ 0.73
TIMP4Q99727 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TIMP4Q99727 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.61■□□□□ 0.73
TIMP4Q99727 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TIMP4Q99727 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TIMP4Q99727 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
TIMP4Q99727 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TIMP4Q99727 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TIMP4Q99727 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TIMP4Q99727 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.6■□□□□ 0.73
TIMP4Q99727 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TIMP4Q99727 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TIMP4Q99727 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TIMP4Q99727 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.6■□□□□ 0.73
TIMP4Q99727 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TIMP4Q99727 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TIMP4Q99727 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
TIMP4Q99727 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.6■□□□□ 0.73
TIMP4Q99727 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.6■□□□□ 0.73
TIMP4Q99727 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.6■□□□□ 0.73
TIMP4Q99727 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.6■□□□□ 0.73
TIMP4Q99727 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.6■□□□□ 0.73
TIMP4Q99727 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.6■□□□□ 0.73
TIMP4Q99727 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TIMP4Q99727 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms