Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC65Q8IXS2 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 HYI-206ENST00000372434 1025 ntTSL 5 BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 ASL-203ENST00000380839 1765 ntTSL 5 BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC65Q8IXS2 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC65Q8IXS2 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 MFF-208ENST00000409616 1247 ntTSL 5 BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 MTURN-203ENST00000409688 843 ntTSL 2 BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC65Q8IXS2 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC65Q8IXS2 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC65Q8IXS2 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC65Q8IXS2 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC23.74■■□□□ 1.39
CCDC65Q8IXS2 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
CCDC65Q8IXS2 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC23.74■■□□□ 1.39
CCDC65Q8IXS2 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC65Q8IXS2 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC23.74■■□□□ 1.39
CCDC65Q8IXS2 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC23.74■■□□□ 1.39
CCDC65Q8IXS2 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC65Q8IXS2 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC65Q8IXS2 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC65Q8IXS2 ME2-206ENST00000638410 2289 ntTSL 5 BASIC23.73■■□□□ 1.39
CCDC65Q8IXS2 ME2-210ENST00000639255 2262 ntTSL 5 BASIC23.73■■□□□ 1.39
CCDC65Q8IXS2 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC65Q8IXS2 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.73■■□□□ 1.39
CCDC65Q8IXS2 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC65Q8IXS2 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC23.73■■□□□ 1.39
CCDC65Q8IXS2 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC65Q8IXS2 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.73■■□□□ 1.39
CCDC65Q8IXS2 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC65Q8IXS2 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC65Q8IXS2 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 STOX2-205ENST00000513034 807 ntTSL 3 BASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 AC104564.3-201ENST00000582367 638 ntBASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 AC009237.3-201ENST00000393279 1427 ntBASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 AP006587.3-201ENST00000525742 1516 ntBASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC65Q8IXS2 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC65Q8IXS2 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
CCDC65Q8IXS2 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC65Q8IXS2 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC65Q8IXS2 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC65Q8IXS2 AC105265.2-201ENST00000467189 838 ntBASIC23.71■■□□□ 1.39
CCDC65Q8IXS2 RHOF-204ENST00000537265 699 ntTSL 2 BASIC23.71■■□□□ 1.39
CCDC65Q8IXS2 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CCDC65Q8IXS2 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms