Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.52■■□□□ 1.04
CXCL12P48061 AL034346.1-201ENST00000568244 1277 ntBASIC21.52■■□□□ 1.04
CXCL12P48061 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CXCL12P48061 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CXCL12P48061 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.03
CXCL12P48061 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CXCL12P48061 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CXCL12P48061 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CXCL12P48061 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CXCL12P48061 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CXCL12P48061 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.51■■□□□ 1.03
CXCL12P48061 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CXCL12P48061 AL158047.1-201ENST00000445918 881 ntBASIC21.51■■□□□ 1.03
CXCL12P48061 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.51■■□□□ 1.03
CXCL12P48061 AC142381.4-202ENST00000563973 229 ntBASIC21.51■■□□□ 1.03
CXCL12P48061 AC120498.10-201ENST00000621827 505 ntBASIC21.51■■□□□ 1.03
CXCL12P48061 MYC-209ENST00000641252 345 ntBASIC21.51■■□□□ 1.03
CXCL12P48061 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CXCL12P48061 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.5■■□□□ 1.03
CXCL12P48061 CREM-210ENST00000374721 2020 ntTSL 5 BASIC21.5■■□□□ 1.03
CXCL12P48061 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CXCL12P48061 OR7E47P-201ENST00000546390 1422 ntBASIC21.5■■□□□ 1.03
CXCL12P48061 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.5■■□□□ 1.03
CXCL12P48061 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CXCL12P48061 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.5■■□□□ 1.03
CXCL12P48061 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.5■■□□□ 1.03
CXCL12P48061 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.5■■□□□ 1.03
CXCL12P48061 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.5■■□□□ 1.03
CXCL12P48061 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CXCL12P48061 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
CXCL12P48061 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CXCL12P48061 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CXCL12P48061 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.5■■□□□ 1.03
CXCL12P48061 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CXCL12P48061 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CXCL12P48061 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
CXCL12P48061 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.49■■□□□ 1.03
CXCL12P48061 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.49■■□□□ 1.03
CXCL12P48061 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.49■■□□□ 1.03
CXCL12P48061 AC006058.3-201ENST00000606217 1069 ntBASIC21.49■■□□□ 1.03
CXCL12P48061 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.49■■□□□ 1.03
CXCL12P48061 LINC01960-201ENST00000563759 1884 ntBASIC21.49■■□□□ 1.03
CXCL12P48061 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CXCL12P48061 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CXCL12P48061 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CXCL12P48061 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CXCL12P48061 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.48■■□□□ 1.03
CXCL12P48061 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
CXCL12P48061 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.48■■□□□ 1.03
CXCL12P48061 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CXCL12P48061 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.48■■□□□ 1.03
CXCL12P48061 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.48■■□□□ 1.03
CXCL12P48061 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CXCL12P48061 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.48■■□□□ 1.03
CXCL12P48061 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.48■■□□□ 1.03
CXCL12P48061 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC21.48■■□□□ 1.03
CXCL12P48061 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
CXCL12P48061 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
CXCL12P48061 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.48■■□□□ 1.03
CXCL12P48061 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
CXCL12P48061 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
CXCL12P48061 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CXCL12P48061 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CXCL12P48061 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CXCL12P48061 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CXCL12P48061 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
CXCL12P48061 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CXCL12P48061 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.47■■□□□ 1.03
CXCL12P48061 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.47■■□□□ 1.03
CXCL12P48061 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.47■■□□□ 1.03
CXCL12P48061 RPS2P4-201ENST00000476944 856 ntBASIC21.47■■□□□ 1.03
CXCL12P48061 AC091874.3-201ENST00000512672 1195 ntBASIC21.47■■□□□ 1.03
CXCL12P48061 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
CXCL12P48061 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.47■■□□□ 1.03
CXCL12P48061 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.47■■□□□ 1.03
CXCL12P48061 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.47■■□□□ 1.03
CXCL12P48061 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.47■■□□□ 1.03
CXCL12P48061 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
CXCL12P48061 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
CXCL12P48061 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CXCL12P48061 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CXCL12P48061 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CXCL12P48061 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.47■■□□□ 1.03
CXCL12P48061 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
CXCL12P48061 AC128676.1-201ENST00000454392 318 ntBASIC21.46■■□□□ 1.03
CXCL12P48061 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.46■■□□□ 1.03
CXCL12P48061 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CXCL12P48061 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.46■■□□□ 1.03
CXCL12P48061 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CXCL12P48061 AC008175.2-201ENST00000612840 297 ntBASIC21.46■■□□□ 1.03
CXCL12P48061 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.46■■□□□ 1.03
CXCL12P48061 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CXCL12P48061 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.46■■□□□ 1.03
CXCL12P48061 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CXCL12P48061 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CXCL12P48061 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.46■■□□□ 1.03
CXCL12P48061 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CXCL12P48061 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
CXCL12P48061 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
CXCL12P48061 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms