Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TNFRSF4P43489 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.67■■□□□ 1.06
TNFRSF4P43489 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TNFRSF4P43489 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TNFRSF4P43489 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
TNFRSF4P43489 AC087742.1-201ENST00000575880 1738 ntBASIC21.66■■□□□ 1.06
TNFRSF4P43489 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.66■■□□□ 1.06
TNFRSF4P43489 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.66■■□□□ 1.06
TNFRSF4P43489 AC105036.2-201ENST00000569468 176 ntBASIC21.66■■□□□ 1.06
TNFRSF4P43489 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.66■■□□□ 1.06
TNFRSF4P43489 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TNFRSF4P43489 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TNFRSF4P43489 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TNFRSF4P43489 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TNFRSF4P43489 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TNFRSF4P43489 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TNFRSF4P43489 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.65■■□□□ 1.06
TNFRSF4P43489 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TNFRSF4P43489 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TNFRSF4P43489 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TNFRSF4P43489 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.65■■□□□ 1.06
TNFRSF4P43489 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.65■■□□□ 1.06
TNFRSF4P43489 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
TNFRSF4P43489 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TNFRSF4P43489 AL138781.1-201ENST00000566567 1274 ntBASIC21.65■■□□□ 1.06
TNFRSF4P43489 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.65■■□□□ 1.06
TNFRSF4P43489 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
TNFRSF4P43489 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.65■■□□□ 1.06
TNFRSF4P43489 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
TNFRSF4P43489 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
TNFRSF4P43489 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
TNFRSF4P43489 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TNFRSF4P43489 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
TNFRSF4P43489 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
TNFRSF4P43489 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TNFRSF4P43489 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TNFRSF4P43489 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
TNFRSF4P43489 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TNFRSF4P43489 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.64■■□□□ 1.05
TNFRSF4P43489 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
TNFRSF4P43489 AC073210.2-201ENST00000430369 194 ntBASIC21.64■■□□□ 1.05
TNFRSF4P43489 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
TNFRSF4P43489 AC007322.4-201ENST00000509611 723 ntBASIC21.64■■□□□ 1.05
TNFRSF4P43489 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.64■■□□□ 1.05
TNFRSF4P43489 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.64■■□□□ 1.05
TNFRSF4P43489 AC120498.10-201ENST00000621827 505 ntBASIC21.64■■□□□ 1.05
TNFRSF4P43489 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TNFRSF4P43489 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TNFRSF4P43489 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TNFRSF4P43489 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TNFRSF4P43489 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TNFRSF4P43489 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
TNFRSF4P43489 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TNFRSF4P43489 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.63■■□□□ 1.05
TNFRSF4P43489 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TNFRSF4P43489 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
TNFRSF4P43489 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TNFRSF4P43489 KRT18P6-201ENST00000555540 1265 ntBASIC21.63■■□□□ 1.05
TNFRSF4P43489 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TNFRSF4P43489 AC008175.2-201ENST00000612840 297 ntBASIC21.63■■□□□ 1.05
TNFRSF4P43489 AC133041.1-202ENST00000642053 222 ntBASIC21.63■■□□□ 1.05
TNFRSF4P43489 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
TNFRSF4P43489 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
TNFRSF4P43489 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
TNFRSF4P43489 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TNFRSF4P43489 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
TNFRSF4P43489 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.63■■□□□ 1.05
TNFRSF4P43489 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TNFRSF4P43489 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
TNFRSF4P43489 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
TNFRSF4P43489 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.62■■□□□ 1.05
TNFRSF4P43489 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.62■■□□□ 1.05
TNFRSF4P43489 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TNFRSF4P43489 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.62■■□□□ 1.05
TNFRSF4P43489 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.62■■□□□ 1.05
TNFRSF4P43489 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.62■■□□□ 1.05
TNFRSF4P43489 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.62■■□□□ 1.05
TNFRSF4P43489 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
TNFRSF4P43489 AC068338.2-201ENST00000563278 1430 ntBASIC21.62■■□□□ 1.05
TNFRSF4P43489 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TNFRSF4P43489 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TNFRSF4P43489 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.61■■□□□ 1.05
TNFRSF4P43489 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TNFRSF4P43489 POU5F1P4-201ENST00000413175 1085 ntBASIC21.61■■□□□ 1.05
TNFRSF4P43489 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TNFRSF4P43489 AC069152.1-201ENST00000438030 544 ntBASIC21.61■■□□□ 1.05
TNFRSF4P43489 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TNFRSF4P43489 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.61■■□□□ 1.05
TNFRSF4P43489 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.61■■□□□ 1.05
TNFRSF4P43489 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.61■■□□□ 1.05
TNFRSF4P43489 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.61■■□□□ 1.05
TNFRSF4P43489 TMEM191A-211ENST00000637163 1067 ntBASIC21.61■■□□□ 1.05
TNFRSF4P43489 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TNFRSF4P43489 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TNFRSF4P43489 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TNFRSF4P43489 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TNFRSF4P43489 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
TNFRSF4P43489 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.6■■□□□ 1.05
TNFRSF4P43489 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.6■■□□□ 1.05
TNFRSF4P43489 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms