Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PKD1P6-201ENST00000343738 4769 ntBASIC20.08■□□□□ 0.81
SOX3P41225 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SOX3P41225 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SOX3P41225 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SOX3P41225 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SOX3P41225 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.08■□□□□ 0.81
SOX3P41225 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SOX3P41225 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.08■□□□□ 0.8
SOX3P41225 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SOX3P41225 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SOX3P41225 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.07■□□□□ 0.8
SOX3P41225 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.07■□□□□ 0.8
SOX3P41225 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SOX3P41225 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SOX3P41225 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.07■□□□□ 0.8
SOX3P41225 YBX1P1-201ENST00000445822 960 ntBASIC20.07■□□□□ 0.8
SOX3P41225 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.07■□□□□ 0.8
SOX3P41225 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SOX3P41225 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SOX3P41225 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SOX3P41225 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SOX3P41225 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SOX3P41225 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.06■□□□□ 0.8
SOX3P41225 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.06■□□□□ 0.8
SOX3P41225 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SOX3P41225 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.06■□□□□ 0.8
SOX3P41225 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.06■□□□□ 0.8
SOX3P41225 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.06■□□□□ 0.8
SOX3P41225 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX3P41225 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX3P41225 OXCT2P1-201ENST00000447263 1535 ntBASIC20.06■□□□□ 0.8
SOX3P41225 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX3P41225 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SOX3P41225 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX3P41225 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SOX3P41225 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SOX3P41225 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX3P41225 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX3P41225 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SOX3P41225 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SOX3P41225 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SOX3P41225 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.05■□□□□ 0.8
SOX3P41225 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.05■□□□□ 0.8
SOX3P41225 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SOX3P41225 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX3P41225 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX3P41225 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SOX3P41225 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX3P41225 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX3P41225 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX3P41225 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SOX3P41225 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SOX3P41225 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.04■□□□□ 0.8
SOX3P41225 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SOX3P41225 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.04■□□□□ 0.8
SOX3P41225 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SOX3P41225 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
SOX3P41225 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SOX3P41225 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SOX3P41225 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.04■□□□□ 0.8
SOX3P41225 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.04■□□□□ 0.8
SOX3P41225 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.04■□□□□ 0.8
SOX3P41225 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.04■□□□□ 0.8
SOX3P41225 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SOX3P41225 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.04■□□□□ 0.8
SOX3P41225 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.04■□□□□ 0.8
SOX3P41225 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SOX3P41225 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
SOX3P41225 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX3P41225 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.03■□□□□ 0.8
SOX3P41225 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.03■□□□□ 0.8
SOX3P41225 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SOX3P41225 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX3P41225 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SOX3P41225 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX3P41225 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.03■□□□□ 0.8
SOX3P41225 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
SOX3P41225 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SOX3P41225 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX3P41225 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.03■□□□□ 0.8
SOX3P41225 SMUG1P1-201ENST00000590640 811 ntBASIC20.03■□□□□ 0.8
SOX3P41225 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.03■□□□□ 0.8
SOX3P41225 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.03■□□□□ 0.8
SOX3P41225 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.03■□□□□ 0.8
SOX3P41225 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SOX3P41225 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.03■□□□□ 0.8
SOX3P41225 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX3P41225 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX3P41225 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
SOX3P41225 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.03■□□□□ 0.8
SOX3P41225 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
SOX3P41225 C11orf96-202ENST00000528572 1834 ntBASIC20.02■□□□□ 0.8
SOX3P41225 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX3P41225 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX3P41225 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX3P41225 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX3P41225 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX3P41225 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SOX3P41225 AC123595.1-201ENST00000440769 1046 ntBASIC20.02■□□□□ 0.8
SOX3P41225 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms