Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PTCHD1Q96NR3 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PTCHD1Q96NR3 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.22■□□□□ 0.83
PTCHD1Q96NR3 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PTCHD1Q96NR3 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
PTCHD1Q96NR3 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PTCHD1Q96NR3 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 AC009237.3-201ENST00000393279 1427 ntBASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PTCHD1Q96NR3 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD1Q96NR3 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD1Q96NR3 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD1Q96NR3 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
PTCHD1Q96NR3 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.2■□□□□ 0.82
PTCHD1Q96NR3 KRT18P14-201ENST00000534205 1250 ntBASIC20.2■□□□□ 0.82
PTCHD1Q96NR3 TERF1P2-201ENST00000583350 1212 ntBASIC20.2■□□□□ 0.82
PTCHD1Q96NR3 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD1Q96NR3 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.2■□□□□ 0.82
PTCHD1Q96NR3 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.2■□□□□ 0.82
PTCHD1Q96NR3 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD1Q96NR3 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD1Q96NR3 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PTCHD1Q96NR3 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
PTCHD1Q96NR3 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 AL034346.1-201ENST00000568244 1277 ntBASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PTCHD1Q96NR3 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 DUX4L2-201ENST00000561772 1275 ntBASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 DUX4L6-201ENST00000626483 1275 ntBASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 DUX4L1-201ENST00000627662 1275 ntBASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 DUX4L8-201ENST00000629013 1275 ntBASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 DUX4L3-201ENST00000630187 1275 ntBASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 DUX4L7-201ENST00000630678 1275 ntBASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 DUX4L5-201ENST00000630834 1275 ntBASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.18■□□□□ 0.82
PTCHD1Q96NR3 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD1Q96NR3 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.17■□□□□ 0.82
PTCHD1Q96NR3 AC005224.4-201ENST00000583262 1652 ntBASIC20.17■□□□□ 0.82
PTCHD1Q96NR3 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.17■□□□□ 0.82
PTCHD1Q96NR3 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PTCHD1Q96NR3 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms