Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
PEX3P56589 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
PEX3P56589 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
PEX3P56589 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
PEX3P56589 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
PEX3P56589 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC23.7■■□□□ 1.38
PEX3P56589 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC23.7■■□□□ 1.38
PEX3P56589 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PEX3P56589 ECEL1P1-201ENST00000373592 1742 ntBASIC23.7■■□□□ 1.38
PEX3P56589 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC23.7■■□□□ 1.38
PEX3P56589 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PEX3P56589 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC23.69■■□□□ 1.38
PEX3P56589 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PEX3P56589 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PEX3P56589 HACD1-201ENST00000326961 773 ntTSL 2 BASIC23.69■■□□□ 1.38
PEX3P56589 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC23.69■■□□□ 1.38
PEX3P56589 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PEX3P56589 KRT18P14-201ENST00000534205 1250 ntBASIC23.69■■□□□ 1.38
PEX3P56589 DUX4L2-201ENST00000561772 1275 ntBASIC23.69■■□□□ 1.38
PEX3P56589 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC23.69■■□□□ 1.38
PEX3P56589 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC23.69■■□□□ 1.38
PEX3P56589 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC23.69■■□□□ 1.38
PEX3P56589 DUX4L6-201ENST00000626483 1275 ntBASIC23.69■■□□□ 1.38
PEX3P56589 DUX4L1-201ENST00000627662 1275 ntBASIC23.69■■□□□ 1.38
PEX3P56589 DUX4L8-201ENST00000629013 1275 ntBASIC23.69■■□□□ 1.38
PEX3P56589 DUX4L3-201ENST00000630187 1275 ntBASIC23.69■■□□□ 1.38
PEX3P56589 DUX4L7-201ENST00000630678 1275 ntBASIC23.69■■□□□ 1.38
PEX3P56589 DUX4L5-201ENST00000630834 1275 ntBASIC23.69■■□□□ 1.38
PEX3P56589 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
PEX3P56589 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
PEX3P56589 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
PEX3P56589 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PEX3P56589 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
PEX3P56589 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC23.68■■□□□ 1.38
PEX3P56589 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
PEX3P56589 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PEX3P56589 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PEX3P56589 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
PEX3P56589 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PEX3P56589 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PEX3P56589 MIR5787-201ENST00000611784 55 ntBASIC23.68■■□□□ 1.38
PEX3P56589 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
PEX3P56589 LSR-203ENST00000360798 1963 ntTSL 2 BASIC23.68■■□□□ 1.38
PEX3P56589 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
PEX3P56589 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
PEX3P56589 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.68■■□□□ 1.38
PEX3P56589 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PEX3P56589 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
PEX3P56589 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
PEX3P56589 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
PEX3P56589 AC034268.1-201ENST00000441047 882 ntBASIC23.67■■□□□ 1.38
PEX3P56589 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC23.67■■□□□ 1.38
PEX3P56589 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC23.67■■□□□ 1.38
PEX3P56589 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC23.67■■□□□ 1.38
PEX3P56589 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
PEX3P56589 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.66■■□□□ 1.38
PEX3P56589 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PEX3P56589 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
PEX3P56589 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC23.66■■□□□ 1.38
PEX3P56589 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PEX3P56589 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC23.66■■□□□ 1.38
PEX3P56589 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC23.66■■□□□ 1.38
PEX3P56589 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
PEX3P56589 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC23.66■■□□□ 1.38
PEX3P56589 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PEX3P56589 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PEX3P56589 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
PEX3P56589 AC055733.4-201ENST00000638462 1354 ntBASIC23.65■■□□□ 1.38
PEX3P56589 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PEX3P56589 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
PEX3P56589 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC23.65■■□□□ 1.38
PEX3P56589 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
PEX3P56589 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC23.65■■□□□ 1.38
PEX3P56589 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
PEX3P56589 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PEX3P56589 ANKRD20A6P-201ENST00000618763 204 ntBASIC23.65■■□□□ 1.38
PEX3P56589 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
PEX3P56589 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC23.65■■□□□ 1.38
PEX3P56589 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
PEX3P56589 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
PEX3P56589 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PEX3P56589 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PEX3P56589 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
PEX3P56589 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC23.65■■□□□ 1.38
PEX3P56589 AP006587.3-201ENST00000525742 1516 ntBASIC23.64■■□□□ 1.38
PEX3P56589 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
PEX3P56589 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
PEX3P56589 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.64■■□□□ 1.38
PEX3P56589 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC23.64■■□□□ 1.38
PEX3P56589 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.64■■□□□ 1.38
PEX3P56589 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
PEX3P56589 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PEX3P56589 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PEX3P56589 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
PEX3P56589 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC23.64■■□□□ 1.37
PEX3P56589 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
PEX3P56589 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC23.64■■□□□ 1.37
PEX3P56589 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
PEX3P56589 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
PEX3P56589 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms