Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
HMGB1P09429 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
HMGB1P09429 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC25.4■■□□□ 1.66
HMGB1P09429 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC25.4■■□□□ 1.66
HMGB1P09429 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC25.4■■□□□ 1.66
HMGB1P09429 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
HMGB1P09429 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC25.39■■□□□ 1.66
HMGB1P09429 TSPY26P-201ENST00000476365 1326 ntBASIC25.39■■□□□ 1.66
HMGB1P09429 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.66
HMGB1P09429 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC25.39■■□□□ 1.66
HMGB1P09429 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
HMGB1P09429 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC25.39■■□□□ 1.66
HMGB1P09429 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC25.39■■□□□ 1.66
HMGB1P09429 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
HMGB1P09429 LHPP-203ENST00000392757 840 ntTSL 3 BASIC25.39■■□□□ 1.66
HMGB1P09429 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC25.39■■□□□ 1.66
HMGB1P09429 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
HMGB1P09429 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
HMGB1P09429 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC25.39■■□□□ 1.65
HMGB1P09429 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
HMGB1P09429 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC25.39■■□□□ 1.65
HMGB1P09429 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
HMGB1P09429 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC25.39■■□□□ 1.65
HMGB1P09429 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
HMGB1P09429 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC25.38■■□□□ 1.65
HMGB1P09429 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC25.38■■□□□ 1.65
HMGB1P09429 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
HMGB1P09429 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC25.38■■□□□ 1.65
HMGB1P09429 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
HMGB1P09429 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
HMGB1P09429 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
HMGB1P09429 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC25.37■■□□□ 1.65
HMGB1P09429 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC25.37■■□□□ 1.65
HMGB1P09429 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
HMGB1P09429 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
HMGB1P09429 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
HMGB1P09429 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC25.37■■□□□ 1.65
HMGB1P09429 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
HMGB1P09429 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC25.37■■□□□ 1.65
HMGB1P09429 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
HMGB1P09429 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
HMGB1P09429 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
HMGB1P09429 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
HMGB1P09429 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
HMGB1P09429 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
HMGB1P09429 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
HMGB1P09429 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
HMGB1P09429 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
HMGB1P09429 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
HMGB1P09429 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC25.36■■□□□ 1.65
HMGB1P09429 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
HMGB1P09429 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
HMGB1P09429 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC25.35■■□□□ 1.65
HMGB1P09429 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC25.35■■□□□ 1.65
HMGB1P09429 AC244015.2-201ENST00000616358 1861 ntBASIC25.35■■□□□ 1.65
HMGB1P09429 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC25.35■■□□□ 1.65
HMGB1P09429 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC25.35■■□□□ 1.65
HMGB1P09429 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
HMGB1P09429 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGB1P09429 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGB1P09429 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGB1P09429 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC25.34■■□□□ 1.65
HMGB1P09429 AC026471.6-201ENST00000622954 1905 ntBASIC25.34■■□□□ 1.65
HMGB1P09429 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
HMGB1P09429 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGB1P09429 EBPL-204ENST00000378272 766 ntTSL 3 BASIC25.34■■□□□ 1.65
HMGB1P09429 MIR572-201ENST00000384983 95 ntBASIC25.34■■□□□ 1.65
HMGB1P09429 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGB1P09429 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC25.34■■□□□ 1.65
HMGB1P09429 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC25.34■■□□□ 1.65
HMGB1P09429 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC25.34■■□□□ 1.65
HMGB1P09429 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
HMGB1P09429 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
HMGB1P09429 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
HMGB1P09429 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
HMGB1P09429 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGB1P09429 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGB1P09429 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGB1P09429 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
HMGB1P09429 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
HMGB1P09429 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
HMGB1P09429 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC25.33■■□□□ 1.65
HMGB1P09429 AC105233.4-201ENST00000642045 216 ntBASIC25.33■■□□□ 1.65
HMGB1P09429 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
HMGB1P09429 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
HMGB1P09429 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC25.33■■□□□ 1.65
HMGB1P09429 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
HMGB1P09429 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
HMGB1P09429 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
HMGB1P09429 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
HMGB1P09429 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC25.32■■□□□ 1.64
HMGB1P09429 AC104564.3-201ENST00000582367 638 ntBASIC25.32■■□□□ 1.64
HMGB1P09429 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
HMGB1P09429 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
HMGB1P09429 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
HMGB1P09429 ASL-203ENST00000380839 1765 ntTSL 5 BASIC25.31■■□□□ 1.64
HMGB1P09429 TUB-203ENST00000534099 1759 ntTSL 2 BASIC25.31■■□□□ 1.64
HMGB1P09429 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
HMGB1P09429 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC25.31■■□□□ 1.64
HMGB1P09429 AC142381.2-201ENST00000566120 298 ntBASIC25.31■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms