Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.91
CLDN9O95484 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.77■□□□□ 0.91
CLDN9O95484 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN9O95484 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN9O95484 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN9O95484 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN9O95484 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN9O95484 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CLDN9O95484 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN9O95484 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
CLDN9O95484 BX842568.3-201ENST00000418104 571 ntBASIC20.76■□□□□ 0.91
CLDN9O95484 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN9O95484 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CLDN9O95484 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN9O95484 AC008406.3-201ENST00000620001 1374 ntBASIC20.75■□□□□ 0.91
CLDN9O95484 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
CLDN9O95484 AC026471.6-201ENST00000622954 1905 ntBASIC20.75■□□□□ 0.91
CLDN9O95484 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.75■□□□□ 0.91
CLDN9O95484 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN9O95484 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
CLDN9O95484 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN9O95484 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.75■□□□□ 0.91
CLDN9O95484 AL136162.1-201ENST00000607711 1078 ntBASIC20.75■□□□□ 0.91
CLDN9O95484 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN9O95484 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN9O95484 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN9O95484 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CLDN9O95484 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CLDN9O95484 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.74■□□□□ 0.91
CLDN9O95484 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN9O95484 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.74■□□□□ 0.91
CLDN9O95484 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.74■□□□□ 0.91
CLDN9O95484 AC026310.3-201ENST00000625186 2373 ntBASIC20.74■□□□□ 0.91
CLDN9O95484 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN9O95484 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN9O95484 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN9O95484 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN9O95484 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN9O95484 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN9O95484 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN9O95484 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN9O95484 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CLDN9O95484 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CLDN9O95484 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.74■□□□□ 0.91
CLDN9O95484 AC024257.2-201ENST00000549699 147 ntBASIC20.74■□□□□ 0.91
CLDN9O95484 AL034346.1-201ENST00000568244 1277 ntBASIC20.74■□□□□ 0.91
CLDN9O95484 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN9O95484 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.74■□□□□ 0.91
CLDN9O95484 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN9O95484 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CLDN9O95484 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CLDN9O95484 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN9O95484 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN9O95484 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN9O95484 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN9O95484 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.73■□□□□ 0.91
CLDN9O95484 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.73■□□□□ 0.91
CLDN9O95484 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN9O95484 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CLDN9O95484 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN9O95484 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN9O95484 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN9O95484 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN9O95484 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN9O95484 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.73■□□□□ 0.91
CLDN9O95484 AC135279.3-201ENST00000610945 1311 ntBASIC20.73■□□□□ 0.91
CLDN9O95484 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN9O95484 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CLDN9O95484 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN9O95484 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
CLDN9O95484 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN9O95484 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN9O95484 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN9O95484 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.72■□□□□ 0.91
CLDN9O95484 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.72■□□□□ 0.91
CLDN9O95484 AC233992.3-201ENST00000607491 485 ntBASIC20.72■□□□□ 0.91
CLDN9O95484 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.72■□□□□ 0.91
CLDN9O95484 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN9O95484 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.72■□□□□ 0.91
CLDN9O95484 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.72■□□□□ 0.91
CLDN9O95484 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CLDN9O95484 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CLDN9O95484 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN9O95484 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN9O95484 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN9O95484 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CLDN9O95484 AP004607.7-201ENST00000527152 1677 ntBASIC20.71■□□□□ 0.91
CLDN9O95484 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN9O95484 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN9O95484 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN9O95484 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.71■□□□□ 0.91
CLDN9O95484 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.71■□□□□ 0.91
CLDN9O95484 AC104564.3-201ENST00000582367 638 ntBASIC20.71■□□□□ 0.91
CLDN9O95484 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.71■□□□□ 0.91
CLDN9O95484 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN9O95484 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
CLDN9O95484 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN9O95484 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CLDN9O95484 AL137060.1-201ENST00000618151 2648 ntBASIC20.71■□□□□ 0.91
CLDN9O95484 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.7■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms