Protein–RNA interactions for Protein: O15266

SHOX, Short stature homeobox protein, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOXO15266 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.25■□□□□ 0.51
SHOXO15266 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
SHOXO15266 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOXO15266 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC18.25■□□□□ 0.51
SHOXO15266 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOXO15266 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOXO15266 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHOXO15266 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHOXO15266 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC18.24■□□□□ 0.51
SHOXO15266 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHOXO15266 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SHOXO15266 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHOXO15266 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC18.24■□□□□ 0.51
SHOXO15266 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.24■□□□□ 0.51
SHOXO15266 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SHOXO15266 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHOXO15266 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHOXO15266 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC18.24■□□□□ 0.51
SHOXO15266 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHOXO15266 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOXO15266 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC18.23■□□□□ 0.51
SHOXO15266 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOXO15266 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOXO15266 AL158211.5-201ENST00000623583 2518 ntBASIC18.23■□□□□ 0.51
SHOXO15266 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHOXO15266 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SHOXO15266 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOXO15266 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHOXO15266 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC18.23■□□□□ 0.51
SHOXO15266 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOXO15266 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.23■□□□□ 0.51
SHOXO15266 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.23■□□□□ 0.51
SHOXO15266 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SHOXO15266 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOXO15266 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOXO15266 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOXO15266 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHOXO15266 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.23■□□□□ 0.51
SHOXO15266 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.22■□□□□ 0.51
SHOXO15266 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
SHOXO15266 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
SHOXO15266 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.22■□□□□ 0.51
SHOXO15266 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHOXO15266 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC18.21■□□□□ 0.51
SHOXO15266 H19-210ENST00000439725 1929 ntTSL 2 BASIC18.21■□□□□ 0.51
SHOXO15266 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SHOXO15266 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC18.21■□□□□ 0.51
SHOXO15266 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHOXO15266 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SHOXO15266 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHOXO15266 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHOXO15266 AC137630.3-201ENST00000607245 391 ntBASIC18.21■□□□□ 0.51
SHOXO15266 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHOXO15266 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHOXO15266 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHOXO15266 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHOXO15266 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHOXO15266 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
SHOXO15266 AC139530.1-201ENST00000575312 1977 ntBASIC18.21■□□□□ 0.5
SHOXO15266 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SHOXO15266 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOXO15266 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOXO15266 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.2■□□□□ 0.5
SHOXO15266 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.2■□□□□ 0.5
SHOXO15266 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.2■□□□□ 0.5
SHOXO15266 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.2■□□□□ 0.5
SHOXO15266 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOXO15266 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
SHOXO15266 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.2■□□□□ 0.5
SHOXO15266 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC18.2■□□□□ 0.5
SHOXO15266 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.2■□□□□ 0.5
SHOXO15266 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.2■□□□□ 0.5
SHOXO15266 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.2■□□□□ 0.5
SHOXO15266 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC18.2■□□□□ 0.5
SHOXO15266 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.2■□□□□ 0.5
SHOXO15266 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.2■□□□□ 0.5
SHOXO15266 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOXO15266 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.2■□□□□ 0.5
SHOXO15266 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOXO15266 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SHOXO15266 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
SHOXO15266 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.19■□□□□ 0.5
SHOXO15266 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SHOXO15266 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SHOXO15266 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms