Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
AP3B1O00203 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
AP3B1O00203 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
AP3B1O00203 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
AP3B1O00203 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
AP3B1O00203 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
AP3B1O00203 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
AP3B1O00203 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
AP3B1O00203 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
AP3B1O00203 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.69■■□□□ 1.06
AP3B1O00203 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.69■■□□□ 1.06
AP3B1O00203 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.69■■□□□ 1.06
AP3B1O00203 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.69■■□□□ 1.06
AP3B1O00203 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
AP3B1O00203 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
AP3B1O00203 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
AP3B1O00203 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
AP3B1O00203 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
AP3B1O00203 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
AP3B1O00203 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
AP3B1O00203 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
AP3B1O00203 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
AP3B1O00203 UNC93B3-201ENST00000308076 687 ntBASIC21.68■■□□□ 1.06
AP3B1O00203 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.68■■□□□ 1.06
AP3B1O00203 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
AP3B1O00203 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
AP3B1O00203 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.68■■□□□ 1.06
AP3B1O00203 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
AP3B1O00203 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
AP3B1O00203 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
AP3B1O00203 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
AP3B1O00203 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
AP3B1O00203 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.67■■□□□ 1.06
AP3B1O00203 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
AP3B1O00203 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
AP3B1O00203 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
AP3B1O00203 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
AP3B1O00203 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.67■■□□□ 1.06
AP3B1O00203 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
AP3B1O00203 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
AP3B1O00203 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.67■■□□□ 1.06
AP3B1O00203 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
AP3B1O00203 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
AP3B1O00203 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
AP3B1O00203 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
AP3B1O00203 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.67■■□□□ 1.06
AP3B1O00203 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
AP3B1O00203 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
AP3B1O00203 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
AP3B1O00203 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.67■■□□□ 1.06
AP3B1O00203 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
AP3B1O00203 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.66■■□□□ 1.06
AP3B1O00203 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
AP3B1O00203 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
AP3B1O00203 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.66■■□□□ 1.06
AP3B1O00203 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.66■■□□□ 1.06
AP3B1O00203 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.66■■□□□ 1.06
AP3B1O00203 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.66■■□□□ 1.06
AP3B1O00203 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
AP3B1O00203 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.66■■□□□ 1.06
AP3B1O00203 AC233992.3-201ENST00000607491 485 ntBASIC21.66■■□□□ 1.06
AP3B1O00203 AC131212.1-201ENST00000613771 668 ntBASIC21.66■■□□□ 1.06
AP3B1O00203 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.66■■□□□ 1.06
AP3B1O00203 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
AP3B1O00203 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
AP3B1O00203 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
AP3B1O00203 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
AP3B1O00203 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
AP3B1O00203 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
AP3B1O00203 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
AP3B1O00203 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.65■■□□□ 1.06
AP3B1O00203 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
AP3B1O00203 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.65■■□□□ 1.06
AP3B1O00203 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.65■■□□□ 1.06
AP3B1O00203 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.65■■□□□ 1.06
AP3B1O00203 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
AP3B1O00203 MIR4767-201ENST00000582827 78 ntBASIC21.65■■□□□ 1.06
AP3B1O00203 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
AP3B1O00203 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.65■■□□□ 1.06
AP3B1O00203 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
AP3B1O00203 AP004607.7-201ENST00000527152 1677 ntBASIC21.65■■□□□ 1.06
AP3B1O00203 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
AP3B1O00203 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
AP3B1O00203 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
AP3B1O00203 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.65■■□□□ 1.06
AP3B1O00203 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.64■■□□□ 1.06
AP3B1O00203 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
AP3B1O00203 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
AP3B1O00203 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP3B1O00203 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
AP3B1O00203 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
AP3B1O00203 AL136162.1-201ENST00000607711 1078 ntBASIC21.64■■□□□ 1.05
AP3B1O00203 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
AP3B1O00203 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP3B1O00203 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.64■■□□□ 1.05
AP3B1O00203 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
AP3B1O00203 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
AP3B1O00203 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.64■■□□□ 1.05
AP3B1O00203 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC21.63■■□□□ 1.05
AP3B1O00203 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms