Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
EXOSC3Q9NQT5 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
EXOSC3Q9NQT5 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.71■□□□□ 0.75
EXOSC3Q9NQT5 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.71■□□□□ 0.75
EXOSC3Q9NQT5 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
EXOSC3Q9NQT5 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
EXOSC3Q9NQT5 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
EXOSC3Q9NQT5 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
EXOSC3Q9NQT5 AP001330.3-201ENST00000520123 633 ntBASIC19.71■□□□□ 0.75
EXOSC3Q9NQT5 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
EXOSC3Q9NQT5 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
EXOSC3Q9NQT5 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 AC099791.1-201ENST00000416440 715 ntBASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 AC008764.7-201ENST00000593779 1081 ntBASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 AL139246.5-201ENST00000606645 996 ntBASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 FAM99A-202ENST00000538190 1989 ntBASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
EXOSC3Q9NQT5 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 MIR939-201ENST00000401314 82 ntBASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
EXOSC3Q9NQT5 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
EXOSC3Q9NQT5 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
EXOSC3Q9NQT5 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.68■□□□□ 0.74
EXOSC3Q9NQT5 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC3Q9NQT5 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
EXOSC3Q9NQT5 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.68■□□□□ 0.74
EXOSC3Q9NQT5 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
EXOSC3Q9NQT5 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC3Q9NQT5 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC3Q9NQT5 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC3Q9NQT5 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
EXOSC3Q9NQT5 RASA4CP-201ENST00000424092 1398 ntBASIC19.68■□□□□ 0.74
EXOSC3Q9NQT5 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
EXOSC3Q9NQT5 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
EXOSC3Q9NQT5 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.67■□□□□ 0.74
EXOSC3Q9NQT5 AC091305.1-201ENST00000479476 895 ntBASIC19.67■□□□□ 0.74
EXOSC3Q9NQT5 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
EXOSC3Q9NQT5 AL031432.3-201ENST00000607698 485 ntBASIC19.67■□□□□ 0.74
EXOSC3Q9NQT5 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
EXOSC3Q9NQT5 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.67■□□□□ 0.74
EXOSC3Q9NQT5 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
EXOSC3Q9NQT5 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
EXOSC3Q9NQT5 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 AF213884.3-201ENST00000563833 479 ntBASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
EXOSC3Q9NQT5 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
EXOSC3Q9NQT5 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms