Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.79■□□□□ 0.76
TIMP4Q99727 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TIMP4Q99727 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP4Q99727 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP4Q99727 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.78■□□□□ 0.76
TIMP4Q99727 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.78■□□□□ 0.76
TIMP4Q99727 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP4Q99727 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
TIMP4Q99727 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP4Q99727 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TIMP4Q99727 AC012414.1-201ENST00000556676 535 ntBASIC19.78■□□□□ 0.76
TIMP4Q99727 AC087742.1-201ENST00000575880 1738 ntBASIC19.78■□□□□ 0.76
TIMP4Q99727 C11orf96-202ENST00000528572 1834 ntBASIC19.78■□□□□ 0.76
TIMP4Q99727 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
TIMP4Q99727 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TIMP4Q99727 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TIMP4Q99727 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TIMP4Q99727 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.77■□□□□ 0.76
TIMP4Q99727 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.77■□□□□ 0.76
TIMP4Q99727 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TIMP4Q99727 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TIMP4Q99727 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TIMP4Q99727 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.77■□□□□ 0.76
TIMP4Q99727 AC092053.2-201ENST00000640557 1818 ntBASIC19.77■□□□□ 0.76
TIMP4Q99727 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TIMP4Q99727 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TIMP4Q99727 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.77■□□□□ 0.76
TIMP4Q99727 YBX1P1-201ENST00000445822 960 ntBASIC19.77■□□□□ 0.76
TIMP4Q99727 MIR6084-201ENST00000622012 110 ntBASIC19.77■□□□□ 0.76
TIMP4Q99727 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TIMP4Q99727 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TIMP4Q99727 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
TIMP4Q99727 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TIMP4Q99727 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
TIMP4Q99727 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TIMP4Q99727 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
TIMP4Q99727 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
TIMP4Q99727 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
TIMP4Q99727 AC027612.3-201ENST00000413684 1047 ntBASIC19.76■□□□□ 0.75
TIMP4Q99727 AC092666.2-201ENST00000613287 246 ntBASIC19.76■□□□□ 0.75
TIMP4Q99727 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TIMP4Q99727 AC068587.7-201ENST00000641602 218 ntBASIC19.76■□□□□ 0.75
TIMP4Q99727 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.76■□□□□ 0.75
TIMP4Q99727 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TIMP4Q99727 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TIMP4Q99727 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
TIMP4Q99727 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.76■□□□□ 0.75
TIMP4Q99727 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
TIMP4Q99727 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TIMP4Q99727 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
TIMP4Q99727 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.75■□□□□ 0.75
TIMP4Q99727 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TIMP4Q99727 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TIMP4Q99727 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
TIMP4Q99727 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TIMP4Q99727 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.75■□□□□ 0.75
TIMP4Q99727 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.75■□□□□ 0.75
TIMP4Q99727 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TIMP4Q99727 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.75■□□□□ 0.75
TIMP4Q99727 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TIMP4Q99727 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
TIMP4Q99727 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TIMP4Q99727 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TIMP4Q99727 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.74■□□□□ 0.75
TIMP4Q99727 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TIMP4Q99727 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.74■□□□□ 0.75
TIMP4Q99727 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
TIMP4Q99727 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TIMP4Q99727 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
TIMP4Q99727 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.74■□□□□ 0.75
TIMP4Q99727 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TIMP4Q99727 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.74■□□□□ 0.75
TIMP4Q99727 AL162430.1-201ENST00000480705 870 ntBASIC19.74■□□□□ 0.75
TIMP4Q99727 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.74■□□□□ 0.75
TIMP4Q99727 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.74■□□□□ 0.75
TIMP4Q99727 AC104564.3-201ENST00000582367 638 ntBASIC19.74■□□□□ 0.75
TIMP4Q99727 AC105233.4-201ENST00000642045 216 ntBASIC19.74■□□□□ 0.75
TIMP4Q99727 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TIMP4Q99727 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.74■□□□□ 0.75
TIMP4Q99727 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
TIMP4Q99727 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TIMP4Q99727 AC123595.1-201ENST00000440769 1046 ntBASIC19.73■□□□□ 0.75
TIMP4Q99727 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.73■□□□□ 0.75
TIMP4Q99727 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TIMP4Q99727 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TIMP4Q99727 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.73■□□□□ 0.75
TIMP4Q99727 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
TIMP4Q99727 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TIMP4Q99727 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TIMP4Q99727 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TIMP4Q99727 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
TIMP4Q99727 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.72■□□□□ 0.75
TIMP4Q99727 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TIMP4Q99727 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.72■□□□□ 0.75
TIMP4Q99727 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
TIMP4Q99727 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TIMP4Q99727 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.72■□□□□ 0.75
TIMP4Q99727 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.72■□□□□ 0.75
TIMP4Q99727 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19.72■□□□□ 0.75
TIMP4Q99727 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms