Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 RNF121-214ENST00000533380 870 ntTSL 3 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 Z99916.2-201ENST00000604037 246 ntBASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
SMC1BQ8NDV3 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SMC1BQ8NDV3 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SMC1BQ8NDV3 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC25.84■■□□□ 1.73
SMC1BQ8NDV3 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC25.84■■□□□ 1.73
SMC1BQ8NDV3 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
SMC1BQ8NDV3 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
SMC1BQ8NDV3 PLLP-204ENST00000569059 665 ntTSL 3 BASIC25.84■■□□□ 1.73
SMC1BQ8NDV3 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC25.84■■□□□ 1.73
SMC1BQ8NDV3 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SMC1BQ8NDV3 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC25.84■■□□□ 1.73
SMC1BQ8NDV3 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC25.84■■□□□ 1.73
SMC1BQ8NDV3 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC25.84■■□□□ 1.73
SMC1BQ8NDV3 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC25.84■■□□□ 1.73
SMC1BQ8NDV3 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.73
SMC1BQ8NDV3 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC25.83■■□□□ 1.73
SMC1BQ8NDV3 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC25.83■■□□□ 1.73
SMC1BQ8NDV3 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
SMC1BQ8NDV3 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
SMC1BQ8NDV3 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC25.83■■□□□ 1.73
SMC1BQ8NDV3 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
SMC1BQ8NDV3 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
SMC1BQ8NDV3 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
SMC1BQ8NDV3 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC25.83■■□□□ 1.73
SMC1BQ8NDV3 ISCU-212ENST00000547005 795 ntTSL 3 BASIC25.83■■□□□ 1.73
SMC1BQ8NDV3 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
SMC1BQ8NDV3 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC25.83■■□□□ 1.73
SMC1BQ8NDV3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC25.83■■□□□ 1.73
SMC1BQ8NDV3 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 RPPH1-201ENST00000516869 333 ntBASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 BX088651.1-201ENST00000540551 451 ntBASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
SMC1BQ8NDV3 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC25.81■■□□□ 1.72
SMC1BQ8NDV3 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC25.81■■□□□ 1.72
SMC1BQ8NDV3 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SMC1BQ8NDV3 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC25.81■■□□□ 1.72
SMC1BQ8NDV3 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC25.81■■□□□ 1.72
SMC1BQ8NDV3 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC25.81■■□□□ 1.72
SMC1BQ8NDV3 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC25.81■■□□□ 1.72
SMC1BQ8NDV3 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC25.81■■□□□ 1.72
SMC1BQ8NDV3 ABHD17AP6-201ENST00000458502 1044 ntBASIC25.81■■□□□ 1.72
SMC1BQ8NDV3 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC25.81■■□□□ 1.72
SMC1BQ8NDV3 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC25.81■■□□□ 1.72
SMC1BQ8NDV3 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC25.81■■□□□ 1.72
SMC1BQ8NDV3 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC25.81■■□□□ 1.72
SMC1BQ8NDV3 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
SMC1BQ8NDV3 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
SMC1BQ8NDV3 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
SMC1BQ8NDV3 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SMC1BQ8NDV3 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SMC1BQ8NDV3 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC25.8■■□□□ 1.72
SMC1BQ8NDV3 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC25.8■■□□□ 1.72
SMC1BQ8NDV3 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
SMC1BQ8NDV3 TK2-213ENST00000563369 882 ntTSL 5 BASIC25.8■■□□□ 1.72
SMC1BQ8NDV3 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC25.8■■□□□ 1.72
SMC1BQ8NDV3 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SMC1BQ8NDV3 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
SMC1BQ8NDV3 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SMC1BQ8NDV3 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC25.79■■□□□ 1.72
SMC1BQ8NDV3 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC25.79■■□□□ 1.72
SMC1BQ8NDV3 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
SMC1BQ8NDV3 AC092803.2-201ENST00000564287 1899 ntBASIC25.79■■□□□ 1.72
SMC1BQ8NDV3 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
SMC1BQ8NDV3 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SMC1BQ8NDV3 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SMC1BQ8NDV3 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
SMC1BQ8NDV3 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SMC1BQ8NDV3 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC25.78■■□□□ 1.72
SMC1BQ8NDV3 TMEM202-AS1-202ENST00000565181 2325 ntBASIC25.78■■□□□ 1.72
SMC1BQ8NDV3 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SMC1BQ8NDV3 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC25.78■■□□□ 1.72
SMC1BQ8NDV3 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms