Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
PTPN9P43378 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
PTPN9P43378 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
PTPN9P43378 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
PTPN9P43378 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC22.47■■□□□ 1.19
PTPN9P43378 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PTPN9P43378 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PTPN9P43378 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC22.47■■□□□ 1.19
PTPN9P43378 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PTPN9P43378 AP004607.7-201ENST00000527152 1677 ntBASIC22.46■■□□□ 1.19
PTPN9P43378 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
PTPN9P43378 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PTPN9P43378 HYI-206ENST00000372434 1025 ntTSL 5 BASIC22.46■■□□□ 1.19
PTPN9P43378 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PTPN9P43378 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC22.46■■□□□ 1.19
PTPN9P43378 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PTPN9P43378 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PTPN9P43378 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC22.46■■□□□ 1.19
PTPN9P43378 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PTPN9P43378 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PTPN9P43378 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PTPN9P43378 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
PTPN9P43378 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC22.45■■□□□ 1.19
PTPN9P43378 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
PTPN9P43378 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PTPN9P43378 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC22.45■■□□□ 1.18
PTPN9P43378 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PTPN9P43378 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
PTPN9P43378 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC22.45■■□□□ 1.18
PTPN9P43378 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
PTPN9P43378 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.45■■□□□ 1.18
PTPN9P43378 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC22.45■■□□□ 1.18
PTPN9P43378 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC22.45■■□□□ 1.18
PTPN9P43378 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC22.45■■□□□ 1.18
PTPN9P43378 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PTPN9P43378 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC22.44■■□□□ 1.18
PTPN9P43378 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PTPN9P43378 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PTPN9P43378 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PTPN9P43378 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PTPN9P43378 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC22.44■■□□□ 1.18
PTPN9P43378 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC22.44■■□□□ 1.18
PTPN9P43378 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC22.44■■□□□ 1.18
PTPN9P43378 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC22.44■■□□□ 1.18
PTPN9P43378 LINC00565-201ENST00000562710 2331 ntBASIC22.44■■□□□ 1.18
PTPN9P43378 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC22.44■■□□□ 1.18
PTPN9P43378 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTPN9P43378 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTPN9P43378 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTPN9P43378 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTPN9P43378 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTPN9P43378 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTPN9P43378 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTPN9P43378 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PTPN9P43378 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC22.43■■□□□ 1.18
PTPN9P43378 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC22.43■■□□□ 1.18
PTPN9P43378 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC22.43■■□□□ 1.18
PTPN9P43378 AC105265.2-201ENST00000467189 838 ntBASIC22.43■■□□□ 1.18
PTPN9P43378 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC22.43■■□□□ 1.18
PTPN9P43378 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC22.43■■□□□ 1.18
PTPN9P43378 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
PTPN9P43378 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PTPN9P43378 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PTPN9P43378 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC22.42■■□□□ 1.18
PTPN9P43378 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC22.42■■□□□ 1.18
PTPN9P43378 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PTPN9P43378 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
PTPN9P43378 MFF-208ENST00000409616 1247 ntTSL 5 BASIC22.42■■□□□ 1.18
PTPN9P43378 ASL-203ENST00000380839 1765 ntTSL 5 BASIC22.42■■□□□ 1.18
PTPN9P43378 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PTPN9P43378 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC22.42■■□□□ 1.18
PTPN9P43378 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
PTPN9P43378 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PTPN9P43378 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.41■■□□□ 1.18
PTPN9P43378 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PTPN9P43378 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC22.41■■□□□ 1.18
PTPN9P43378 STOX2-205ENST00000513034 807 ntTSL 3 BASIC22.41■■□□□ 1.18
PTPN9P43378 RHOF-204ENST00000537265 699 ntTSL 2 BASIC22.41■■□□□ 1.18
PTPN9P43378 AC012414.1-201ENST00000556676 535 ntBASIC22.41■■□□□ 1.18
PTPN9P43378 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC22.41■■□□□ 1.18
PTPN9P43378 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC22.41■■□□□ 1.18
PTPN9P43378 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
PTPN9P43378 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
PTPN9P43378 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC22.4■■□□□ 1.18
PTPN9P43378 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC22.4■■□□□ 1.18
PTPN9P43378 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PTPN9P43378 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC22.4■■□□□ 1.18
PTPN9P43378 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
PTPN9P43378 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC22.4■■□□□ 1.18
PTPN9P43378 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PTPN9P43378 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTPN9P43378 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTPN9P43378 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC22.4■■□□□ 1.18
PTPN9P43378 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTPN9P43378 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTPN9P43378 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC22.4■■□□□ 1.18
PTPN9P43378 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PTPN9P43378 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC22.39■■□□□ 1.18
PTPN9P43378 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
PTPN9P43378 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC22.39■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms