Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSX1P28360 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX1P28360 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
MSX1P28360 LINC00526-201ENST00000581067 1875 ntBASIC19.71■□□□□ 0.75
MSX1P28360 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX1P28360 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX1P28360 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.71■□□□□ 0.75
MSX1P28360 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX1P28360 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MSX1P28360 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX1P28360 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
MSX1P28360 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX1P28360 AC105233.4-201ENST00000642045 216 ntBASIC19.71■□□□□ 0.75
MSX1P28360 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX1P28360 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.71■□□□□ 0.75
MSX1P28360 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
MSX1P28360 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX1P28360 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSX1P28360 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.71■□□□□ 0.75
MSX1P28360 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.71■□□□□ 0.75
MSX1P28360 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSX1P28360 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.7■□□□□ 0.74
MSX1P28360 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSX1P28360 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
MSX1P28360 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
MSX1P28360 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSX1P28360 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.7■□□□□ 0.74
MSX1P28360 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC19.7■□□□□ 0.74
MSX1P28360 AC092437.1-201ENST00000624794 1048 ntBASIC19.7■□□□□ 0.74
MSX1P28360 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.7■□□□□ 0.74
MSX1P28360 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSX1P28360 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSX1P28360 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
MSX1P28360 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSX1P28360 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSX1P28360 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
MSX1P28360 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSX1P28360 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
MSX1P28360 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX1P28360 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX1P28360 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX1P28360 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MSX1P28360 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX1P28360 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
MSX1P28360 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.69■□□□□ 0.74
MSX1P28360 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX1P28360 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.69■□□□□ 0.74
MSX1P28360 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX1P28360 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX1P28360 AC133561.1-201ENST00000568600 2415 ntBASIC19.69■□□□□ 0.74
MSX1P28360 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX1P28360 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
MSX1P28360 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.69■□□□□ 0.74
MSX1P28360 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.69■□□□□ 0.74
MSX1P28360 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.69■□□□□ 0.74
MSX1P28360 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
MSX1P28360 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX1P28360 AL034346.1-201ENST00000568244 1277 ntBASIC19.69■□□□□ 0.74
MSX1P28360 SMUG1P1-201ENST00000590640 811 ntBASIC19.69■□□□□ 0.74
MSX1P28360 AL354811.1-201ENST00000610286 706 ntBASIC19.69■□□□□ 0.74
MSX1P28360 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX1P28360 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
MSX1P28360 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSX1P28360 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSX1P28360 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSX1P28360 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.68■□□□□ 0.74
MSX1P28360 AC080038.3-201ENST00000623346 1952 ntBASIC19.68■□□□□ 0.74
MSX1P28360 ECEL1P1-201ENST00000373592 1742 ntBASIC19.68■□□□□ 0.74
MSX1P28360 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
MSX1P28360 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
MSX1P28360 AC012414.1-201ENST00000556676 535 ntBASIC19.68■□□□□ 0.74
MSX1P28360 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.68■□□□□ 0.74
MSX1P28360 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.68■□□□□ 0.74
MSX1P28360 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.68■□□□□ 0.74
MSX1P28360 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.68■□□□□ 0.74
MSX1P28360 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSX1P28360 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
MSX1P28360 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
MSX1P28360 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.67■□□□□ 0.74
MSX1P28360 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MSX1P28360 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
MSX1P28360 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX1P28360 AL117328.2-201ENST00000624617 1940 ntBASIC19.67■□□□□ 0.74
MSX1P28360 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
MSX1P28360 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX1P28360 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX1P28360 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MSX1P28360 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.67■□□□□ 0.74
MSX1P28360 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
MSX1P28360 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.67■□□□□ 0.74
MSX1P28360 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
MSX1P28360 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.67■□□□□ 0.74
MSX1P28360 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX1P28360 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
MSX1P28360 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
MSX1P28360 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
MSX1P28360 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.66■□□□□ 0.74
MSX1P28360 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.66■□□□□ 0.74
MSX1P28360 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC19.66■□□□□ 0.74
MSX1P28360 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms